RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C10orf105Q8TEF2 133 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 MBD3L1Q8WWY6 194 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 CLCC1Q96S66 551 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 MLXQ9UH92 298 aa14.81□□□□□ -0.04
CCDC88C-203ENST00000389856 IGLV1-47P01700 117 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 ARF6P62330 175 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 POU2AF1Q16633 256 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 IZUMO4Q1ZYL8 232 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 AARDQ4LEZ3 155 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 KHDC3LQ587J8 217 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 OR5AN1Q8NGI8 311 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 MRPL20Q9BYC9 149 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 FBXO7Q9Y3I1 522 aa14.8□□□□□ -0.04
CCDC88C-203ENST00000389856 H3BP45 60 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 METTL15P1P0C7V9 234 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 COX7A1P24310 79 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 LMO4P61968 165 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 RUNX1Q01196 453 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 SLC38A11Q08AI6 406 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 OR11H6Q8NGC7 330 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 ST6GALNAC6Q969X2 333 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 WDR61Q9GZS3 305 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 WASHC3Q9Y3C0 194 aa14.79□□□□□ -0.04
CCDC88C-203ENST00000389856 IGHV2-70DA0A0C4DH43 119 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 BUB1B-PAK6H3BSN5 160 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 SOX15O60248 233 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 NDUFS6O75380 124 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 LINC00205P59089 165 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 RNF212Q495C1 297 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 SPANXN5Q5MJ07 72 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 ZNF787Q6DD87 383 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 C1orf229Q6ZS94 237 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 PNKDQ8N490 385 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 OR4C13Q8NGP0 309 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 SFT2D1Q8WV19 159 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 FLYWCH2Q96CP2 140 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 RHOVQ96L33 236 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 NABP2Q9BQ15 211 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 TMEM140Q9NV12 185 aa14.78□□□□□ -0.04
CCDC88C-203ENST00000389856 C7orf77A4D0Y5 90 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 H0YJW9 148 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 MBP02144 154 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 AWAT1Q58HT5 328 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 TMEM41BQ5BJD5 291 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 HAPLN4Q86UW8 402 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 Q8N7P7 452 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 OR52E5Q8NH55 327 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 VSTM2AQ8TAG5 236 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 LHX4Q969G2 390 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 RPEQ96AT9 228 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 PERPQ96FX8 193 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 TMEM147Q9BVK8 224 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 RPS10P5Q9NQ39 176 aa14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 POLR3KQ9Y2Y1 108 aaPredicted RBP14.77□□□□□ -0.04
CCDC88C-203ENST00000389856 LRRK2Q5S007 2527 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 COLCA2A8K830 154 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 VWC2LB2RUY7 222 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 M0R036 132 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 MT-ND4LP03901 98 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 HTR1DP28221 377 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 LCN2P80188 198 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 ARL16Q0P5N6 197 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 TMEM177Q53S58 311 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 DTD1Q8TEA8 209 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 TAF15Q92804 592 aaKnown RBP eCLIP14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 OR4C12Q96R67 309 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 ZNRD1Q9P1U0 126 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 PRNDQ9UKY0 176 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 INSIG2Q9Y5U4 225 aa14.77□□□□□ -0.05
CCDC88C-203ENST00000389856 TSPAN9O75954 239 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 ARG1P05089 322 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 SRP19P09132 144 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 SLC25A16P16260 332 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 TAGLN2P37802 199 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 RPP30P78346 268 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 CCL20P78556 96 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 SSX9Q7RTT3 188 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 ZNF429Q86V71 674 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 BEX4Q9NWD9 120 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 FKBP11Q9NYL4 201 aa14.76□□□□□ -0.05
CCDC88C-203ENST00000389856 LRBAP50851 2863 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 IFNA1P01562 189 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 ZFP36P26651 326 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 SPCS3P61009 180 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 ICAM4Q14773 271 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 OR4A47Q6IF82 309 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 OR10P1Q8NGE3 313 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 OR4A5Q8NH83 315 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 HARBI1Q96MB7 349 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 P2RX4Q99571 388 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 SIRT7Q9NRC8 400 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 RPRMQ9NS64 109 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 DPM3Q9P2X0 92 aa14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 GCN1Q92616 2671 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-203ENST00000389856 LOC102723971A0A1B0GUV8 181 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 CEBPZOSA8MTT3 80 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 OOSP1A8MZH6 123 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 IFNA17P01571 189 aa14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 SNRNP70P08621 437 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-203ENST00000389856 LGALS7P47929 136 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms