RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 GFOD1Q9NXC2 390 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 CREBBPQ92793 2442 aa12.74□□□□□ -0.37
CCDC40-202ENST00000374876 ITGB1BP1O14713 200 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 SLC31A2O15432 143 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 EIF3GO75821 320 aaKnown RBP eCLIP12.73□□□□□ -0.37
CCDC40-202ENST00000374876 IGHV4-39P01824 125 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 CGB3P0DN86 165 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 CGB7P0DN87 165 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 IRF2P14316 349 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 MAS1LP35410 378 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 SNRPEP62304 92 aaKnown RBP12.73□□□□□ -0.37
CCDC40-202ENST00000374876 RPP30P78346 268 aaKnown RBP12.73□□□□□ -0.37
CCDC40-202ENST00000374876 FAM90A2PQ658T7 463 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 VKORC1L1Q8N0U8 176 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 OR10G9Q8NGN4 311 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 OR10G7Q8NGN6 311 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 MALSU1Q96EH3 234 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 SLC25A22Q9H936 323 aa12.73□□□□□ -0.37
CCDC40-202ENST00000374876 C15orf62A8K5M9 175 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 B4DEV8 164 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 C17orf112F2Z3M2 114 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 PMS2P11Q13670 270 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 DUX4L9Q6RFH8 374 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-202ENST00000374876 OR4S2Q8NH73 311 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 Q8TCH9 128 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 YPEL4Q96NS1 127 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 FOXC2Q99958 501 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 SIRT7Q9NRC8 400 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 AKAP9Q99996 3911 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 MAST4O15021 2626 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 CTXND1A0A1B0GTU2 59 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 IFNA10P01566 189 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 PAX1P15863 534 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 PNRC1Q12796 327 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-202ENST00000374876 CT45A1Q5HYN5 189 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 HEPN1Q6WQI6 88 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 CT45A3Q8NHU0 189 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 GAFA1Q96PS6 74 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 CCL13Q99616 98 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 ACTR3CQ9C0K3 210 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-202ENST00000374876 HEYLQ9NQ87 328 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-202ENST00000374876 GAB2Q9UQC2 676 aa12.72□□□□□ -0.37
CCDC40-202ENST00000374876 A0A1W2PPE3 182 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 CXorf65A6NEN9 183 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 HMGB3O15347 200 aaKnown RBP12.71□□□□□ -0.37
CCDC40-202ENST00000374876 GYPAP02724 150 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 PPOXP50336 477 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 UTF1Q5T230 341 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-202ENST00000374876 OR52E5Q8NH55 327 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 MS4A5Q9H3V2 200 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 TMEM140Q9NV12 185 aa12.71□□□□□ -0.37
CCDC40-202ENST00000374876 SAA2-SAA4A0A096LPE2 208 aa12.71□□□□□ -0.38
CCDC40-202ENST00000374876 SAA2P0DJI9 122 aaPredicted RBP12.71□□□□□ -0.38
CCDC40-202ENST00000374876 CD1BP29016 333 aa12.71□□□□□ -0.38
CCDC40-202ENST00000374876 PSMB3P49720 205 aa12.71□□□□□ -0.38
CCDC40-202ENST00000374876 LRRC75A-AS1Q8N1F1 130 aa12.71□□□□□ -0.38
CCDC40-202ENST00000374876 DDB2Q92466 427 aa12.71□□□□□ -0.38
CCDC40-202ENST00000374876 RAB1BQ9H0U4 201 aa12.71□□□□□ -0.38
CCDC40-202ENST00000374876 DOCK11Q5JSL3 2073 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 C5orf52A6NGY3 159 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 MDKP21741 143 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-202ENST00000374876 RELBQ01201 579 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 MEF2BQ02080 365 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-202ENST00000374876 ZNF788Q6ZQV5 615 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 C1orf229Q6ZS94 237 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-202ENST00000374876 KRTAP1-3Q8IUG1 177 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 LYG1Q8N1E2 194 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 FAM216BQ8N7L0 139 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 WFDC11Q8NEX6 87 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 ZNF251Q9BRH9 671 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 URGCP-MRPS24S4R325 110 aa12.7□□□□□ -0.38
CCDC40-202ENST00000374876 TRAV3A0A0B4J244 114 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 SMCO3A2RU48 225 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 ZNF98A6NK75 572 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 C17orf100A8MU93 164 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 CYB5BO43169 146 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 RPS10P46783 165 aaKnown RBP12.69□□□□□ -0.38
CCDC40-202ENST00000374876 THBS3P49746 956 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 EFNA4P52798 201 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 CCL8P80075 99 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 MRPS11P82912 194 aaKnown RBP12.69□□□□□ -0.38
CCDC40-202ENST00000374876 PDLIM3Q53GG5 364 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-202ENST00000374876 Q5PR19 223 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 C1QL4Q86Z23 238 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 TMPRSS5Q9H3S3 457 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 IDI2-AS1Q9NZ38 188 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 WDR83OSQ9Y284 106 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 OTOGQ6ZRI0 2925 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 ZNF729A6NN14 1252 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-202ENST00000374876 TNFRSF1AP19438 455 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 VDAC2P45880 294 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-202ENST00000374876 ELOBQ15370 118 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 ACOT6Q3I5F7 207 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-202ENST00000374876 TEX36Q5VZQ5 186 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 ZNF343Q6P1L6 599 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 TCF23Q7RTU1 214 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 IQCF2Q8IXL9 164 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 Q8WTZ3 238 aa12.69□□□□□ -0.38
CCDC40-202ENST00000374876 RAB24Q969Q5 203 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms