RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RAB19A4D1S5 217 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 C5orf63A6NC05 138 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TSPAN13O95857 204 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 PLAUP00749 431 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 BGLAPP02818 100 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 RND2P52198 227 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 PRR30Q53SZ7 412 aaPredicted RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 TPTE2P1Q5T6R2 138 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 Q6ZNX1 250 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 LINC01555Q8NAE3 123 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 ZC2HC1AQ96GY0 325 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 ZNF778Q96MU6 729 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SLC25A37Q9NYZ2 338 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 NCOR2Q9Y618 2525 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 A0A1B0GW64 132 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 NPIPB4C9JG80 1138 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TSPAN2O60636 221 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 VENTXO95231 258 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 IGHV3-7P01780 117 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 IAPPP10997 89 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 GPX2P18283 190 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 CDC34P49427 236 aaPredicted RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 PTTG1IPP53801 180 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SLC38A11Q08AI6 406 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 HCP5Q6MZN7 132 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 PQLC2Q6ZP29 291 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 LINC00469Q8N7U9 141 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 GDPD1Q8N9F7 314 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 OR5A1Q8NGJ0 315 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 PLA2G12AQ9BZM1 189 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 NHP2Q9NX24 153 aaKnown RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 IL36RNQ9UBH0 155 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 ABCA12Q86UK0 2595 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 USF3Q68DE3 2245 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 CACNA1IQ9P0X4 2223 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 DUXBA0A1W2PPF3 345 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 TMEM89A2RUT3 159 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 C12orf77C9JDV5 145 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 H3BMH7 237 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 APELAP0DMC3 54 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 OR10J1P30954 320 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 UBA52P62987 128 aaKnown RBP3.4□□□□□ -1.86
USH2A-202ENST00000366942 WDR38Q5JTN6 314 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 MSRB3Q8IXL7 192 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 SMIM2Q9BVW6 85 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 SEC11CQ9BY50 192 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 BET1LQ9NYM9 111 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 SELENOFO60613 162 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 SYNJ2BPP57105 145 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 TIRAPP58753 221 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 MLLT11Q13015 90 aaPredicted RBP3.4□□□□□ -1.86
USH2A-202ENST00000366942 PCLAFQ15004 111 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 CHST5Q9GZS9 411 aa3.4□□□□□ -1.86
USH2A-202ENST00000366942 C3orf84H3BNL1 204 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 HMGN4O00479 90 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 MFNGO00587 321 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 CD37P11049 281 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 PSMB2P49721 201 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 BHLHA9Q7RTU4 235 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNRF1Q8ND25 227 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 FAM213BQ8TBF2 198 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 CSTL1Q9H114 145 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 NPVFQ9HCQ7 196 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 NPIPB13A6NJU9 1138 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 SRRM5B3KS81 715 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 NAPSAO96009 420 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 UMODP07911 640 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 MST1P26927 711 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 GNG4P50150 75 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 H3F3AP84243 136 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 IL24Q13007 206 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 TCTEX1D4Q5JR98 221 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 MYPOPQ86VE0 399 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 CYB561D1Q8N8Q1 229 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 TAMM41Q96BW9 452 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 PHYHIPLQ96FC7 376 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 EBF2Q9HAK2 575 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNF446Q9NWS9 450 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 TRPM6Q9BX84 2022 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNF705GA8MUZ8 300 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNF705FA8MVS1 300 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 RPL36A-HNRNPH2H7BZ11 118 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNF701M0R085 212 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 RRHO14718 337 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 SPRY2O43597 315 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 TOXO94900 526 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNF705DP0CH99 300 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 ZNF705BP0CI00 300 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 DEFB131AP59861 70 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 USF2Q15853 346 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 NOL4LQ96MY1 436 aaPredicted RBP3.4□□□□□ -1.87
USH2A-202ENST00000366942 SIGLEC9Q9Y336 463 aa3.4□□□□□ -1.87
USH2A-202ENST00000366942 LINC00862A6NCI5 91 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 RBFOX2O43251 390 aaKnown RBP eCLIP3.39□□□□□ -1.87
USH2A-202ENST00000366942 CIDEAO60543 219 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 CST4P01036 141 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 IGHV1-46P01743 117 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 CD7P09564 240 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 ZDHHC24Q6UX98 284 aa3.39□□□□□ -1.87
USH2A-202ENST00000366942 ATG4DQ86TL0 474 aaPredicted RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms