RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 REG1AP05451 166 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 F2RP25116 425 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 PSMB6P28072 239 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 RPEL1Q2QD12 228 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 ZNF585BQ52M93 769 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 RNASE12Q5GAN4 147 aaKnown RBP14.02□□□□□ -0.17
CLN3-202ENST00000355477 GPR141Q7Z602 305 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 DMBX1Q8NFW5 382 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 AP3S1Q92572 193 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 ASCL2Q99929 193 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 TMEM140Q9NV12 185 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 FBXL7Q9UJT9 491 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 DMRT1Q9Y5R6 373 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 SMAD5-AS1Q9Y6J3 95 aa14.02□□□□□ -0.17
CLN3-202ENST00000355477 GPR31O00270 319 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 NDUFB8O95169 186 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 CTRB1P17538 263 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 RCVRNP35243 200 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 LPAR6P43657 344 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 TSPAN5P62079 268 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 PHLDA2Q53GA4 152 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 CTRB2Q6GPI1 263 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 CMTM1Q8IZ96 169 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 FCAMRQ8WWV6 532 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 DGCR14Q96DF8 476 aaKnown RBP14.01□□□□□ -0.17
CLN3-202ENST00000355477 COMMD9Q9P000 198 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 KLK11Q9UBX7 282 aa14.01□□□□□ -0.17
CLN3-202ENST00000355477 PPP5D1E7EU14 171 aa14□□□□□ -0.17
CLN3-202ENST00000355477 M0QYG6 137 aa14□□□□□ -0.17
CLN3-202ENST00000355477 IGHV3-23P01764 117 aa14□□□□□ -0.17
CLN3-202ENST00000355477 CSN3P07498 182 aa14□□□□□ -0.17
CLN3-202ENST00000355477 SPCS2Q15005 226 aa14□□□□□ -0.17
CLN3-202ENST00000355477 KLK9Q2XQG4 91 aa14□□□□□ -0.17
CLN3-202ENST00000355477 OR52I2Q8NH67 350 aa14□□□□□ -0.17
CLN3-202ENST00000355477 ABHD1Q96SE0 405 aa14□□□□□ -0.17
CLN3-202ENST00000355477 MIXL1Q9H2W2 232 aa14□□□□□ -0.17
CLN3-202ENST00000355477 EXTL2Q9UBQ6 330 aa14□□□□□ -0.17
CLN3-202ENST00000355477 KLK9Q9UKQ9 250 aa14□□□□□ -0.17
CLN3-202ENST00000355477 S4R3C0 116 aa14□□□□□ -0.17
CLN3-202ENST00000355477 IGLC7A0M8Q6 106 aa13.99□□□□□ -0.17
CLN3-202ENST00000355477 MARCH11A6NNE9 402 aa13.99□□□□□ -0.17
CLN3-202ENST00000355477 HLA-AP01891 365 aaKnown RBP13.99□□□□□ -0.17
CLN3-202ENST00000355477 NHLRC4P0CG21 123 aaPredicted RBP13.99□□□□□ -0.17
CLN3-202ENST00000355477 TATDN3Q17R31 274 aa13.99□□□□□ -0.17
CLN3-202ENST00000355477 OR10W1Q8NGF6 305 aa13.99□□□□□ -0.17
CLN3-202ENST00000355477 COMMD5Q9GZQ3 224 aa13.99□□□□□ -0.17
CLN3-202ENST00000355477 IGLV11-55A0A075B6I3 123 aa13.98□□□□□ -0.17
CLN3-202ENST00000355477 TEX50A0A1B0GTY4 177 aa13.98□□□□□ -0.17
CLN3-202ENST00000355477 KRASP01116 189 aa13.98□□□□□ -0.17
CLN3-202ENST00000355477 G6PCP35575 357 aa13.98□□□□□ -0.17
CLN3-202ENST00000355477 Q8N1Y9 231 aa13.98□□□□□ -0.17
CLN3-202ENST00000355477 NSG2Q9Y328 171 aa13.98□□□□□ -0.17
CLN3-202ENST00000355477 NBEAL2Q6ZNJ1 2754 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 CTDSP2O14595 271 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 DHFRP00374 187 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 FGF2P09038 288 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 DEFA4P12838 97 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 UCP3P55916 312 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 ERVK-16P61578 105 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 LPCAT3Q6P1A2 487 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 CLEC19AQ6UXS0 136 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 ADAMTSL5Q6ZMM2 481 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 TBC1D26Q86UD7 250 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 CLVS1Q8IUQ0 354 aaPredicted RBP13.97□□□□□ -0.17
CLN3-202ENST00000355477 CCDC140Q96MF4 163 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 SIGLEC8Q9NYZ4 499 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 MTFP1Q9UDX5 166 aa13.97□□□□□ -0.17
CLN3-202ENST00000355477 IZUMO1RA6ND01 250 aa13.96□□□□□ -0.17
CLN3-202ENST00000355477 OR2C1O95371 312 aa13.96□□□□□ -0.17
CLN3-202ENST00000355477 CD3DP04234 171 aa13.96□□□□□ -0.17
CLN3-202ENST00000355477 HIST1H1BP16401 226 aaKnown RBP13.96□□□□□ -0.17
CLN3-202ENST00000355477 MECP2P51608 486 aaKnown RBP13.96□□□□□ -0.17
CLN3-202ENST00000355477 SBSPONQ8IVN8 264 aa13.96□□□□□ -0.17
CLN3-202ENST00000355477 LAX1Q8IWV1 398 aa13.96□□□□□ -0.17
CLN3-202ENST00000355477 SRSF8Q9BRL6 282 aaKnown RBP13.96□□□□□ -0.17
CLN3-202ENST00000355477 QTRT1Q9BXR0 403 aaKnown RBP13.96□□□□□ -0.17
CLN3-202ENST00000355477 U3KQK5 164 aa13.96□□□□□ -0.17
CLN3-202ENST00000355477 HUWE1Q7Z6Z7 4374 aaKnown RBP13.96□□□□□ -0.17
CLN3-202ENST00000355477 MFSD2BA6NFX1 497 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 GGCTO75223 188 aaKnown RBP13.95□□□□□ -0.18
CLN3-202ENST00000355477 FRMD6-AS1P0C7T7 363 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 TRAPPC2P0DI81 140 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 TRAPPC2BP0DI82 140 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 EDN2P20800 178 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 WT1-ASQ06250 92 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 SLC38A6Q8IZM9 456 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 CADM3Q8N126 398 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 OR4D10Q8NGI6 311 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 EEF1AKMT3Q96AZ1 226 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 NDUFA4L2Q9NRX3 87 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 PEMTQ9UBM1 199 aa13.95□□□□□ -0.18
CLN3-202ENST00000355477 DBX1A6NMT0 343 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 H0Y980 276 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 RGS5O15539 181 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 TPPPO94811 219 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 IGKV1-39P01597 117 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 IGKV1D-39P04432 117 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 OR13C7P0DN81 318 aa13.94□□□□□ -0.18
CLN3-202ENST00000355477 RNASE10Q5GAN6 216 aaKnown RBP13.94□□□□□ -0.18
CLN3-202ENST00000355477 FAM209BQ5JX69 171 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms