RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 ASPHD1Q5U4P2 390 aa14.9□□□□□ -0.02
SYNE4-202ENST00000340477 UPK2O00526 184 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 SNAPC5O75971 98 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 KRASP01116 189 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 FGF2P09038 288 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 RPA2P15927 270 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 PTBP1P26599 531 aaKnown RBP eCLIP14.89□□□□□ -0.035e-8■■■■□ 19.5
SYNE4-202ENST00000340477 FHL3Q13643 280 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 BEAN1Q3B7T3 259 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 ADAD2Q8NCV1 583 aaKnown RBP14.89□□□□□ -0.03
SYNE4-202ENST00000340477 OR4C16Q8NGL9 310 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 USMG5Q96IX5 58 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 TSC22D3Q99576 134 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 SCP2D1Q9UJQ7 156 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 ZNF257Q9Y2Q1 563 aa14.89□□□□□ -0.03
SYNE4-202ENST00000340477 ANKRD20A5PA0PJZ0 165 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 LINC01619G3V211 115 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 ATG12O94817 140 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 SURF2Q15527 256 aaPredicted RBP14.88□□□□□ -0.03
SYNE4-202ENST00000340477 KPRPQ5T749 579 aaPredicted RBP14.88□□□□□ -0.03
SYNE4-202ENST00000340477 THOC7Q6I9Y2 204 aaKnown RBP14.88□□□□□ -0.03
SYNE4-202ENST00000340477 FAAP20Q6NZ36 180 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 TTC9CQ8N5M4 171 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 OR13C8Q8NGS7 320 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 SOSTQ9BQB4 213 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 THAP7Q9BT49 309 aaPredicted RBP14.88□□□□□ -0.03
SYNE4-202ENST00000340477 MCUBQ9NWR8 336 aa14.88□□□□□ -0.03
SYNE4-202ENST00000340477 FAM223BA6NKX1 122 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 H0Y980 276 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 CTSDP07339 412 aaPredicted RBP14.87□□□□□ -0.03
SYNE4-202ENST00000340477 ZNF735P0CB33 412 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 PI3P19957 117 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 G6PCP35575 357 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 REC114Q7Z4M0 266 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 FAM223AQ8IWN6 122 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 Q8N402 240 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 MARCH1Q8TCQ1 289 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 SCGB3A2Q96PL1 93 aa14.87□□□□□ -0.03
SYNE4-202ENST00000340477 ALX4Q9H161 411 aaPredicted RBP14.87□□□□□ -0.03
SYNE4-202ENST00000340477 ZMAT5Q9UDW3 170 aaKnown RBP14.87□□□□□ -0.03
SYNE4-202ENST00000340477 HMX3A6NHT5 357 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 NPIPB5A8MRT5 1133 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 TEX22C9J3V5 150 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 CYB5BO43169 146 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 B3GALNT1O75752 331 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 HSPB1P04792 205 aaKnown RBP14.86□□□□□ -0.03
SYNE4-202ENST00000340477 IL6RP08887 468 aaPredicted RBP14.86□□□□□ -0.03
SYNE4-202ENST00000340477 DEFA4P12838 97 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 RHOGP84095 191 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 ZNF585BQ52M93 769 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 CADM3Q8N126 398 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 SRSF8Q9BRL6 282 aaKnown RBP14.86□□□□□ -0.03
SYNE4-202ENST00000340477 QTRT1Q9BXR0 403 aaKnown RBP14.86□□□□□ -0.03
SYNE4-202ENST00000340477 RANGRFQ9HD47 186 aaPredicted RBP14.86□□□□□ -0.03
SYNE4-202ENST00000340477 FKBP11Q9NYL4 201 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 PRNDQ9UKY0 176 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 V9GYH0 126 aa14.86□□□□□ -0.03
SYNE4-202ENST00000340477 C3orf85A0A1B0GTC6 90 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 OR2B8PP59922 312 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 TRIM16LQ309B1 348 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 C9orf66Q5T8R8 295 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 H2BFWTQ7Z2G1 175 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 HSD17B13Q7Z5P4 300 aaPredicted RBP14.85□□□□□ -0.03
SYNE4-202ENST00000340477 CCDC190Q86UF4 302 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 TOMM5Q8N4H5 51 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 NECAP1Q8NC96 275 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 OR51S1Q8NGJ8 323 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 OR1L8Q8NGR8 309 aa14.85□□□□□ -0.03
SYNE4-202ENST00000340477 IGHV4OR15-8A0A075B7B6 117 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 A0A087WW49 117 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 TRAV3A0A0B4J244 114 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 TEX13DA0A0J9YY54 714 aaPredicted RBP14.84□□□□□ -0.03
SYNE4-202ENST00000340477 SEC14L6B5MCN3 397 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 RBMXL2O75526 392 aaKnown RBP14.84□□□□□ -0.03
SYNE4-202ENST00000340477 TRAPPC2P0DI81 140 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 TRAPPC2BP0DI82 140 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 HIST1H1BP16401 226 aaKnown RBP14.84□□□□□ -0.03
SYNE4-202ENST00000340477 ZP3P21754 424 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 PSMB6P28072 239 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 INPP1P49441 399 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 AKR1C2P52895 323 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 ATP5G2Q06055 141 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 FAM209BQ5JX69 171 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 FOXB2Q5VYV0 432 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 OR4A16Q8NH70 328 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 RNASE11Q8TAA1 199 aaKnown RBP14.84□□□□□ -0.03
SYNE4-202ENST00000340477 MRGPRFQ96AM1 343 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 HINT2Q9BX68 163 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 SLC2A8Q9NY64 477 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 OR51B2Q9Y5P1 312 aa14.84□□□□□ -0.03
SYNE4-202ENST00000340477 OVOL1O14753 267 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 PRH1P02810 166 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 MYOD1P15172 320 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 ETV6P41212 452 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 DEFA5Q01523 94 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 EXOSC2Q13868 293 aaKnown RBP14.83□□□□□ -0.04
SYNE4-202ENST00000340477 OR6Q1Q8NGQ2 317 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 DEDD2Q8WXF8 326 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 AKIP1Q9NQ31 210 aa14.83□□□□□ -0.04
SYNE4-202ENST00000340477 ANKRD34BA5PLL1 514 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms