RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LGALS9O00182 355 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 FCGR3BO75015 233 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 OR2J3O76001 311 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 FOLR2P14207 255 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 EDN2P20800 178 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 DTYMKP23919 212 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 MXD1Q05195 221 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 SLC25A42Q86VD7 318 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 DCUN1D5Q9BTE7 237 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 FUNDC2Q9BWH2 189 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 MRPS26Q9BYN8 205 aaKnown RBP15.87■□□□□ 0.13
VPS53-216ENST00000574029 WFDC10AQ9H1F0 79 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 TECRQ9NZ01 308 aaKnown RBP15.87■□□□□ 0.13
VPS53-216ENST00000574029 ELF5Q9UKW6 265 aaPredicted RBP15.87■□□□□ 0.13
VPS53-216ENST00000574029 ZNF257Q9Y2Q1 563 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 OR11H12B2RN74 326 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 TEX22C9J3V5 150 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 GGCTO75223 188 aaKnown RBP15.86■□□□□ 0.13
VPS53-216ENST00000574029 KCTD9Q7L273 389 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 CROCCP3Q8IVE0 287 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 SRD5A3Q9H8P0 318 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 PRELID3BQ9Y3B1 194 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 OR2W1Q9Y3N9 320 aa15.86■□□□□ 0.13
VPS53-216ENST00000574029 HMX3A6NHT5 357 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 J3QRK9 145 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 IGLV2-14P01704 120 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 HLA-DQB1P01920 261 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 RPL30P62888 115 aaKnown RBP15.85■□□□□ 0.13
VPS53-216ENST00000574029 ARL6IP1Q15041 203 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 GUCA2BQ16661 112 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 MRPS7Q9Y2R9 242 aaKnown RBP15.85■□□□□ 0.13
VPS53-216ENST00000574029 RBMX2Q9Y388 322 aaKnown RBP15.85■□□□□ 0.13
VPS53-216ENST00000574029 HYDINQ4G0P3 5121 aa15.85■□□□□ 0.13
VPS53-216ENST00000574029 NPIPB5A8MRT5 1133 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 SLC22A5O76082 557 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 OR2C1O95371 312 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 HLA-AP01891 365 aaKnown RBP15.84■□□□□ 0.13
VPS53-216ENST00000574029 CTXN2P0C2S0 81 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 TGFBR1P36897 503 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 RPS19P39019 145 aaKnown RBP15.84■□□□□ 0.13
VPS53-216ENST00000574029 GPHB5Q86YW7 130 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 VKORC1L1Q8N0U8 176 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 WDR89Q96FK6 387 aaPredicted RBP15.84■□□□□ 0.13
VPS53-216ENST00000574029 ATG5Q9H1Y0 275 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 FBXL7Q9UJT9 491 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 ETV7Q9Y603 341 aa15.84■□□□□ 0.13
VPS53-216ENST00000574029 IL6RP08887 468 aaPredicted RBP15.83■□□□□ 0.12
VPS53-216ENST00000574029 NFYAP23511 347 aaPredicted RBP15.83■□□□□ 0.12
VPS53-216ENST00000574029 ALDH3B2P48448 385 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 LSM3P62310 102 aaKnown RBP15.83■□□□□ 0.12
VPS53-216ENST00000574029 CDNFQ49AH0 187 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 OR2B11Q5JQS5 317 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 IDNKQ5T6J7 187 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 C19orf35Q6ZS72 473 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 PUSL1Q8N0Z8 303 aaKnown RBP15.83■□□□□ 0.12
VPS53-216ENST00000574029 VSTM2AQ8TAG5 236 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 TMEM167AQ8TBQ9 72 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 OR2A7Q96R45 310 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 ST6GALNAC5Q9BVH7 336 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 SLC2A9Q9NRM0 540 aa15.83■□□□□ 0.12
VPS53-216ENST00000574029 IGKV1D-13A0A0B4J2D9 117 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 E7EUB6 86 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 SCGNO76038 276 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 KBTBD11O94819 623 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 ZNF735P0CB33 412 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 IGKV1-13P0DP09 117 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 CBLN1P23435 193 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 MAS1LP35410 378 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 EIF4EBP1Q13541 118 aaPredicted RBP15.82■□□□□ 0.12
VPS53-216ENST00000574029 KLK9Q2XQG4 91 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 HACD4Q5VWC8 232 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 LGALS14Q8TCE9 139 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 CCDC140Q96MF4 163 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 FANCD2OSQ96PS1 177 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 HSD17B10Q99714 261 aaKnown RBP15.82■□□□□ 0.12
VPS53-216ENST00000574029 DCSTAMPQ9H295 470 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 KLK9Q9UKQ9 250 aa15.82■□□□□ 0.12
VPS53-216ENST00000574029 A0A1B0GW64 132 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 NDUFB8O95169 186 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 CRYGCP07315 174 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 ARL3P36405 182 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 RPL27AP46776 148 aaKnown RBP15.81■□□□□ 0.12
VPS53-216ENST00000574029 BRWD1-AS2P59051 145 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 OR5H6Q8NGV6 325 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 OR4S2Q8NH73 311 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 CACNG8Q8WXS5 425 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 FYTTD1Q96QD9 318 aaKnown RBP15.81■□□□□ 0.12
VPS53-216ENST00000574029 RHBDL2Q9NX52 303 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 SPATA2Q9UM82 520 aa15.81■□□□□ 0.12
VPS53-216ENST00000574029 TMEM213A2RRL7 107 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 DPPA5A6NC42 116 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 A8MWP6 167 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 IGHV3-23P01764 117 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 CNIH2Q6PI25 160 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 CLEC19AQ6UXS0 136 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 SLC16A13Q7RTY0 426 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 TMEM61Q8N0U2 210 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 SLC25A46Q96AG3 418 aa15.8■□□□□ 0.12
VPS53-216ENST00000574029 A0A0A6YYH2 397 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 A6NJ64 397 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms