RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	SNRPGP15	A8MWD9	76 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079		H3BUA1	57 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	GEMIN2	O14893	280 aa	Known RBP	9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	PDCD6	O75340	191 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	HBZ	P02008	142 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	CX3CL1	P78423	397 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	KLF5	Q13887	457 aa	Predicted RBP	9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	CDK10	Q15131	360 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	PLGLA	Q15195	96 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	RNASE10	Q5GAN6	216 aa	Known RBP	9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	ATAD3C	Q5T2N8	411 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	ZNF833P	Q6ZTB9	187 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	GAPT	Q8N292	157 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	ARRDC1	Q8N5I2	433 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	CASTOR1	Q8WTX7	329 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	MRPL20	Q9BYC9	149 aa	Known RBP	9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	IFT46	Q9NQC8	304 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	MCUB	Q9NWR8	336 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	ZNF581	Q9P0T4	197 aa		9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	RCC2	Q9P258	522 aa	Known RBP	9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	ELF5	Q9UKW6	265 aa	Predicted RBP	9.46	□□□□□ -0.9
CAPN1-223	ENST00000533079	TRAV6	A0A075B6T7	132 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079		A0A0G2JLM5	398 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	RRH	O14718	337 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	CCNK	O75909	580 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	TAS2R46	P59540	309 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	RRAS2	P62070	204 aa	Predicted RBP	9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	ARFRP1	Q13795	201 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	MORN2	Q502X0	79 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	LY6G6F	Q5SQ64	297 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	UNQ5815/PRO19632	Q6UWF5	114 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079		Q6ZS49	121 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	PPP1R27	Q86WC6	154 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	ODF3L1	Q8IXM7	274 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	PRR18	Q8N4B5	295 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR51S1	Q8NGJ8	323 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR4K15	Q8NH41	348 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	ABHD5	Q8WTS1	349 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	NUDCD2	Q8WVJ2	157 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	RBMXL1	Q96E39	390 aa	Known RBP	9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	ST6GAL2	Q96JF0	529 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	RITA1	Q96K30	269 aa		9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	RIMS4	Q9H426	269 aa	Predicted RBP	9.45	□□□□□ -0.9
CAPN1-223	ENST00000533079	C13orf42	A0A1B0GVH6	325 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR5H14	A6NHG9	310 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	MCRIP1	C9JLW8	97 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	CNIH1	O95406	144 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	TRGV3	P03979	118 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	EGR2	P11161	476 aa	Predicted RBP	9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	HTD2	P86397	168 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	GLDN	Q6ZMI3	551 aa	Predicted RBP	9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	IL34	Q6ZMJ4	242 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	C6orf201	Q7Z4U5	140 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	GVQW1	Q8N7I0	195 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR4D10	Q8NGI6	311 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	SNAPC3	Q92966	411 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	MS4A10	Q96PG2	267 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	SCGB3A2	Q96PL1	93 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	TINAGL1	Q9GZM7	467 aa	Predicted RBP	9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	GPN1	Q9HCN4	374 aa	Predicted RBP	9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR2S2	Q9NQN1	319 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	ETAA1	Q9NY74	926 aa		9.44	□□□□□ -0.9
CAPN1-223	ENST00000533079	SAA2-SAA4	A0A096LPE2	208 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	MEIS3P1	A6NDR6	274 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	YPEL1	O60688	119 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR2A4	O95047	310 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	FCER2	P06734	321 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	SAA2	P0DJI9	122 aa	Predicted RBP	9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	CD81	P60033	236 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	ZNF562	Q6V9R5	426 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	IDO2	Q6ZQW0	420 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	TMEM17	Q86X19	198 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	TCTE3	Q8IZS6	198 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	BEST4	Q8NFU0	473 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR5AP2	Q8NGF4	316 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	OR1L1	Q8NH94	360 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	TERB2	Q8NHR7	220 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	YPEL2	Q96QA6	119 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	RNF5	Q99942	180 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	GINS4	Q9BRT9	223 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	FAAP24	Q9BTP7	215 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	ST6GALNAC5	Q9BVH7	336 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	MED28	Q9H204	178 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	FBXL15	Q9H469	300 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	PLEKHA3	Q9HB20	300 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	MBNL3	Q9NUK0	354 aa	Known RBP	9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	PEMT	Q9UBM1	199 aa		9.43	□□□□□ -0.9
CAPN1-223	ENST00000533079	TRBV6-6	A0A0A6YYG2	114 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079		M0QYG6	137 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	SPDEF	O95238	335 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	BRI3	O95415	125 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	AADAC	P22760	399 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	MC5R	P33032	325 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	HRH1	P35367	487 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	SYNJ2BP	P57105	145 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	UBE2M	P61081	183 aa	Known RBP	9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	MRPS15	P82914	257 aa	Known RBP	9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	SURF2	Q15527	256 aa	Predicted RBP	9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	FAAP20	Q6NZ36	180 aa		9.42	□□□□□ -0.9
CAPN1-223	ENST00000533079	DHRS11	Q6UWP2	260 aa		9.42	□□□□□ -0.9

Retrieved 100 of 20,778 RNA–protein pairs in 67 ms