RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 KBTBD11O94819 623 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 OR2A4O95047 310 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 MRGPRG-AS1Q2M3A8 158 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 TEX45Q8NA69 505 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 RBPMSQ93062 196 aaKnown RBP10.87□□□□□ -0.67
CD44-224ENST00000526669 OR2A7Q96R45 310 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 PRSS22Q9GZN4 317 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 RANBP3Q9H6Z4 567 aaPredicted RBP10.87□□□□□ -0.67
CD44-224ENST00000526669 ZNF430Q9H8G1 570 aaPredicted RBP10.87□□□□□ -0.67
CD44-224ENST00000526669 LINC00527Q9UJ94 153 aa10.87□□□□□ -0.67
CD44-224ENST00000526669 CDS2O95674 445 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 HOXB5P09067 269 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 OR2B8PP59922 312 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 NDPQ00604 133 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 TNXAQ16473 311 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 POU2AF1Q16633 256 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 C10orf55Q5SWW7 151 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 H2BFWTQ7Z2G1 175 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 LYZL2Q7Z4W2 148 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 PPP1R27Q86WC6 154 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 LGI3Q8N145 548 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 SLC35G3Q8N808 338 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 UXS1Q8NBZ7 420 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 TMEM167AQ8TBQ9 72 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 ABHD5Q8WTS1 349 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 TMEM56Q96MV1 263 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 MARVELD1Q9BSK0 173 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 ALX4Q9H161 411 aaPredicted RBP10.86□□□□□ -0.67
CD44-224ENST00000526669 PARP11Q9NR21 331 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 BET1LQ9NYM9 111 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 TMEM56-RWDD3S4R434 201 aa10.86□□□□□ -0.67
CD44-224ENST00000526669 IGHV7-81A0A0B4J1V7 117 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 UPK2O00526 184 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 DHFRP00374 187 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 HLA-DRB1P01911 266 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 OPN1MWP04001 364 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 IL5P05113 134 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 OPN1MW2P0DN77 364 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 OPN1MW3P0DN78 364 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 MECP2P51608 486 aaKnown RBP10.85□□□□□ -0.67
CD44-224ENST00000526669 RAG2P55895 527 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 PRSS8Q16651 343 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 KRTAP24-1Q3LI83 254 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 SLC35E3Q7Z769 313 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 VSTM2AQ8TAG5 236 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 ZNF431Q8TF32 576 aaPredicted RBP10.85□□□□□ -0.67
CD44-224ENST00000526669 GPR146Q96CH1 333 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 AIFM2Q9BRQ8 373 aa10.85□□□□□ -0.67
CD44-224ENST00000526669 FAM103A1Q9BTL3 118 aaKnown RBP10.85□□□□□ -0.67
CD44-224ENST00000526669 A0A0B4J293 547 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 ADAP1O75689 374 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 CNIH1O95406 144 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 DUS4LO95620 317 aaKnown RBP10.84□□□□□ -0.67
CD44-224ENST00000526669 VDAC2P45880 294 aaPredicted RBP10.84□□□□□ -0.67
CD44-224ENST00000526669 RPL15P61313 204 aaKnown RBP10.84□□□□□ -0.67
CD44-224ENST00000526669 CX3CL1P78423 397 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 SRPXP78539 464 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 SSBP2P81877 361 aaPredicted RBP10.84□□□□□ -0.67
CD44-224ENST00000526669 MMD2Q8IY49 270 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 COQ8AQ8NI60 647 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 GRPEL2Q8TAA5 225 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 ZFAND2BQ8WV99 257 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 IL22RA2Q969J5 263 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 RRNAD1Q96FB5 475 aaKnown RBP10.84□□□□□ -0.67
CD44-224ENST00000526669 NOL4LQ96MY1 436 aaPredicted RBP10.84□□□□□ -0.67
CD44-224ENST00000526669 FBXO7Q9Y3I1 522 aa10.84□□□□□ -0.67
CD44-224ENST00000526669 A0A0B4J2A0 478 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 DBX1A6NMT0 343 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 CCSO14618 274 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 ATP6V0E1O15342 81 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 RBMXL2O75526 392 aaKnown RBP10.83□□□□□ -0.68
CD44-224ENST00000526669 TSPAN9O75954 239 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 SNAPC5O75971 98 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 ATG12O94817 140 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 NXPH3O95157 252 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 IGHG2P01859 326 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 IL6RP08887 468 aaPredicted RBP10.83□□□□□ -0.68
CD44-224ENST00000526669 P0C879 139 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 APELAP0DMC3 54 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 MDKP21741 143 aaPredicted RBP10.83□□□□□ -0.68
CD44-224ENST00000526669 RPL8P62917 257 aaKnown RBP10.83□□□□□ -0.68
CD44-224ENST00000526669 FXYD3Q14802 87 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 OXA1LQ15070 435 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 ECSCRQ19T08 205 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 GGNBP1Q5YKI7 109 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 Q6ZRM9 215 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 C12orf45Q8N5I9 185 aaPredicted RBP10.83□□□□□ -0.68
CD44-224ENST00000526669 OR4A16Q8NH70 328 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 OR4A5Q8NH83 315 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 ARPC1AQ92747 370 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 PHB2Q99623 299 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 OR51J1Q9H342 316 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 GPN1Q9HCN4 374 aaPredicted RBP10.83□□□□□ -0.68
CD44-224ENST00000526669 SHPKQ9UHJ6 478 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 MMP24Q9Y5R2 645 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 ALG5Q9Y673 324 aa10.83□□□□□ -0.68
CD44-224ENST00000526669 C15orf61A6NNL5 157 aa10.82□□□□□ -0.68
CD44-224ENST00000526669 CREBL2O60519 120 aaPredicted RBP10.82□□□□□ -0.68
CD44-224ENST00000526669 PRAF2O60831 178 aa10.82□□□□□ -0.68
CD44-224ENST00000526669 ACTL6BO94805 426 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 169.1 ms