RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 EXOSC4Q9NPD3 245 aaKnown RBP2.58□□□□□ -2
CD44-217ENST00000525348 ACP6Q9NPH0 428 aa2.58□□□□□ -2
CD44-217ENST00000525348 GPR84Q9NQS5 396 aa2.58□□□□□ -2
CD44-217ENST00000525348 VAX2Q9UIW0 290 aa2.58□□□□□ -2
CD44-217ENST00000525348 HDGFL3Q9Y3E1 203 aa2.58□□□□□ -2
CD44-217ENST00000525348 COL5A3P25940 1745 aaPredicted RBP2.58□□□□□ -2
CD44-217ENST00000525348 ANKRD31Q8N7Z5 1873 aa2.58□□□□□ -2
CD44-217ENST00000525348 EDC4Q6P2E9 1401 aaKnown RBP2.58□□□□□ -2
CD44-217ENST00000525348 SLX4Q8IY92 1834 aa2.57□□□□□ -2
CD44-217ENST00000525348 MYO5AQ9Y4I1 1855 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 NSG1A0A0A6YYJ2 146 aa2.57□□□□□ -2
CD44-217ENST00000525348 TRAV19A0A0A6YYK7 116 aa2.57□□□□□ -2
CD44-217ENST00000525348 BORCS7-ASMTA0A0B4J1R7 106 aa2.57□□□□□ -2
CD44-217ENST00000525348 IGHV1-69-2A0A0G2JMI3 117 aa2.57□□□□□ -2
CD44-217ENST00000525348 A0A0G2JMM0 328 aa2.57□□□□□ -2
CD44-217ENST00000525348 A0A0G2JND7 137 aa2.57□□□□□ -2
CD44-217ENST00000525348 A0A1W2PPB8 328 aa2.57□□□□□ -2
CD44-217ENST00000525348 IGLC7A0M8Q6 106 aa2.57□□□□□ -2
CD44-217ENST00000525348 LRRC30A6NM36 301 aa2.57□□□□□ -2
CD44-217ENST00000525348 HMSDA8MTL9 139 aa2.57□□□□□ -2
CD44-217ENST00000525348 KIR3DP1A8MWS1 328 aa2.57□□□□□ -2
CD44-217ENST00000525348 TAX1BP3O14907 124 aa2.57□□□□□ -2
CD44-217ENST00000525348 ENSAO43768 121 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 HSBP1O75506 76 aa2.57□□□□□ -2
CD44-217ENST00000525348 NDUFA7O95182 113 aa2.57□□□□□ -2
CD44-217ENST00000525348 MOSP00540 346 aa2.57□□□□□ -2
CD44-217ENST00000525348 IGLV1-47P01700 117 aa2.57□□□□□ -2
CD44-217ENST00000525348 P04436 131 aa2.57□□□□□ -2
CD44-217ENST00000525348 CXCL3P19876 107 aa2.57□□□□□ -2
CD44-217ENST00000525348 PSMB1P20618 241 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 USF1P22415 310 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 ATP6V0CP27449 155 aa2.57□□□□□ -2
CD44-217ENST00000525348 BLVRBP30043 206 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 PRDX3P30048 256 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 OR10J1P30954 320 aa2.57□□□□□ -2
CD44-217ENST00000525348 NTSP30990 170 aa2.57□□□□□ -2
CD44-217ENST00000525348 NSG1P42857 185 aa2.57□□□□□ -2
CD44-217ENST00000525348 P2RY1P47900 373 aa2.57□□□□□ -2
CD44-217ENST00000525348 GNG4P50150 75 aa2.57□□□□□ -2
CD44-217ENST00000525348 EFNB2P52799 333 aa2.57□□□□□ -2
CD44-217ENST00000525348 DIO3P55073 304 aa2.57□□□□□ -2
CD44-217ENST00000525348 OR12D2P58182 307 aa2.57□□□□□ -2
CD44-217ENST00000525348 KRTAP10-1P60331 282 aa2.57□□□□□ -2
CD44-217ENST00000525348 YPEL3P61236 119 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 LSM3P62310 102 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 SLC35A2P78381 396 aa2.57□□□□□ -2
CD44-217ENST00000525348 TNFAIP6P98066 277 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 EWSR1Q01844 656 aaKnown RBP eCLIP2.57□□□□□ -2
CD44-217ENST00000525348 MEF2CQ06413 473 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 RAB40BQ12829 278 aa2.57□□□□□ -2
CD44-217ENST00000525348 KLRB1Q12918 225 aa2.57□□□□□ -2
CD44-217ENST00000525348 RGNQ15493 299 aa2.57□□□□□ -2
CD44-217ENST00000525348 UBE2V2Q15819 145 aa2.57□□□□□ -2
CD44-217ENST00000525348 LRRC10Q5BKY1 277 aa2.57□□□□□ -2
CD44-217ENST00000525348 CLEC12AQ5QGZ9 265 aa2.57□□□□□ -2
CD44-217ENST00000525348 C12orf54Q6X4T0 127 aa2.57□□□□□ -2
CD44-217ENST00000525348 IL34Q6ZMJ4 242 aa2.57□□□□□ -2
CD44-217ENST00000525348 H2AFVQ71UI9 128 aa2.57□□□□□ -2
CD44-217ENST00000525348 TMEM183AQ8IXX5 376 aa2.57□□□□□ -2
CD44-217ENST00000525348 DEFB107AQ8IZN7 70 aa2.57□□□□□ -2
CD44-217ENST00000525348 GATD1Q8NB37 220 aa2.57□□□□□ -2
CD44-217ENST00000525348 ZNF439Q8NDP4 499 aa2.57□□□□□ -2
CD44-217ENST00000525348 OR5AU1Q8NGC0 362 aa2.57□□□□□ -2
CD44-217ENST00000525348 OR1L8Q8NGR8 309 aa2.57□□□□□ -2
CD44-217ENST00000525348 OR2A12Q8NGT7 310 aa2.57□□□□□ -2
CD44-217ENST00000525348 OR6K2Q8NGY2 324 aa2.57□□□□□ -2
CD44-217ENST00000525348 PLPPR1Q8TBJ4 325 aa2.57□□□□□ -2
CD44-217ENST00000525348 PP6455Q8WZ26 134 aa2.57□□□□□ -2
CD44-217ENST00000525348 NDRG1Q92597 394 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 DLX4Q92988 240 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 FAM104AQ969W3 186 aa2.57□□□□□ -2
CD44-217ENST00000525348 FGGYQ96C11 551 aa2.57□□□□□ -2
CD44-217ENST00000525348 SEC22AQ96IW7 307 aa2.57□□□□□ -2
CD44-217ENST00000525348 GINS4Q9BRT9 223 aa2.57□□□□□ -2
CD44-217ENST00000525348 MS4A6AQ9H2W1 248 aa2.57□□□□□ -2
CD44-217ENST00000525348 OR52D1Q9H346 318 aa2.57□□□□□ -2
CD44-217ENST00000525348 RETNQ9HD89 108 aa2.57□□□□□ -2
CD44-217ENST00000525348 MEPEQ9NQ76 525 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 LYRM2Q9NU23 88 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 HRASLS2Q9NWW9 162 aa2.57□□□□□ -2
CD44-217ENST00000525348 SIGLEC8Q9NYZ4 499 aa2.57□□□□□ -2
CD44-217ENST00000525348 GNG12Q9UBI6 72 aa2.57□□□□□ -2
CD44-217ENST00000525348 CACFD1Q9UGQ2 172 aa2.57□□□□□ -2
CD44-217ENST00000525348 MCTS1Q9ULC4 181 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 SIGLEC7Q9Y286 467 aa2.57□□□□□ -2
CD44-217ENST00000525348 ZNF443Q9Y2A4 671 aaPredicted RBP2.57□□□□□ -2
CD44-217ENST00000525348 RCL1Q9Y2P8 373 aaKnown RBP2.57□□□□□ -2
CD44-217ENST00000525348 PDE4DIPQ5VU43 2346 aa2.57□□□□□ -2
CD44-217ENST00000525348 LOC107984640A0A0U1RRK4 108 aa2.56□□□□□ -2
CD44-217ENST00000525348 ODAMA1E959 279 aa2.56□□□□□ -2
CD44-217ENST00000525348 C7orf77A4D0Y5 90 aa2.56□□□□□ -2
CD44-217ENST00000525348 B4DEV8 164 aa2.56□□□□□ -2
CD44-217ENST00000525348 C11orf98E9PRG8 122 aa2.56□□□□□ -2
CD44-217ENST00000525348 H0YJW9 148 aa2.56□□□□□ -2
CD44-217ENST00000525348 H3BQ15 152 aa2.56□□□□□ -2
CD44-217ENST00000525348 CCDC179H3BU77 68 aa2.56□□□□□ -2
CD44-217ENST00000525348 J3KT08 172 aa2.56□□□□□ -2
CD44-217ENST00000525348 TNFRSF11BO00300 401 aa2.56□□□□□ -2
CD44-217ENST00000525348 MFNGO00587 321 aa2.56□□□□□ -2
CD44-217ENST00000525348 CHEK1O14757 476 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms