RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 LFNGQ8NES3 379 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 TERB2Q8NHR7 220 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 RNASE11Q8TAA1 199 aaKnown RBP4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 TMEM167AQ8TBQ9 72 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 C4orf3Q8WVX3 66 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 SRSF12Q8WXF0 261 aaKnown RBP4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 DEDD2Q8WXF8 326 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 GPHA2Q96T91 129 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 TSC22D3Q99576 134 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 THAP7Q9BT49 309 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 FAM103A1Q9BTL3 118 aaKnown RBP4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 RSRP1Q9BUV0 290 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 GPR61Q9BZJ8 451 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 COMMD5Q9GZQ3 224 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 SLA2Q9H6Q3 261 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 ZNF430Q9H8G1 570 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 SLC2A9Q9NRM0 540 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 FAM212BQ9NTI7 297 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 COA4Q9NYJ1 87 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 VSIG4Q9Y279 399 aa4.24□□□□□ -1.73
HMGB1P40-201ENST00000525121 A0A0G2JLM5 398 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 C13orf42A0A1B0GVH6 325 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 MSGN1A6NI15 193 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 MARCH11A6NNE9 402 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 SRRM4A7MD48 611 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 CENPXA8MT69 81 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 H0Y980 276 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 ARPC1BO15143 372 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 RBMXL2O75526 392 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 S1PR2O95136 353 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 DUS4LO95620 317 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 KRASP01116 189 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 IGLV1-40P01703 118 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 TRGV3P03979 118 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 CRYGBP07316 175 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 CTSDP07339 412 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 FGF2P09038 288 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR9G9P0C7N8 305 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 RPA2P15927 270 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 HLA-GP17693 338 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 MYCNOSP40205 109 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 ETV6P41212 452 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 LPAR6P43657 344 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 CDX1P47902 265 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 RAB9AP51151 201 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 AKR1C2P52895 323 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 RAB25P57735 213 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 RND3P61587 244 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 CFHR3Q02985 330 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 PJVKQ0ZLH3 352 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 POU2AF1Q16633 256 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 TCTEX1D4Q5JR98 221 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 HIST2H2BDQ6DRA6 164 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 THOC7Q6I9Y2 204 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR4A47Q6IF82 309 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 FAAP20Q6NZ36 180 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 C8orf86Q6ZUL3 223 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 H2BFWTQ7Z2G1 175 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 CCDC190Q86UF4 302 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 LHFPL1Q86WI0 220 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 VKORC1L1Q8N0U8 176 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 PUSL1Q8N0Z8 303 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 RNF152Q8N8N0 203 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 GDPD1Q8N9F7 314 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 MINDY2Q8NBR6 621 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR4D10Q8NGI6 311 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR51S1Q8NGJ8 323 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR4C16Q8NGL9 310 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR6Q1Q8NGQ2 317 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR13C8Q8NGS7 320 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 MARCH1Q8TCQ1 289 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 DPF1Q92782 380 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 UBE2E2Q96LR5 201 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 FYTTD1Q96QD9 318 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 PDCD10Q9BUL8 212 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 MCRIP2Q9BUT9 160 aaKnown RBP4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 BATF3Q9NR55 127 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 TMEM140Q9NV12 185 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 SLC2A8Q9NY64 477 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 FKBP11Q9NYL4 201 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 BET1LQ9NYM9 111 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 PRNDQ9UKY0 176 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 FBXO7Q9Y3I1 522 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 NUBP2Q9Y5Y2 271 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 V9GYH0 126 aa4.23□□□□□ -1.73
HMGB1P40-201ENST00000525121 C3orf85A0A1B0GTC6 90 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 FAM223BA6NKX1 122 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 ADARB2-AS1A8MUL3 147 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 CCL24O00175 119 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 UPK2O00526 184 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 OR8U8P0C7N1 319 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 APELAP0DMC3 54 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 ANXA3P12429 323 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 DEFA4P12838 97 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 PI3P19957 117 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 PPIFP30405 207 aaKnown RBP4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 G6PCP35575 357 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 MECP2P51608 486 aaKnown RBP4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 SRPXP78539 464 aa4.22□□□□□ -1.73
HMGB1P40-201ENST00000525121 DHODHQ02127 395 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms