RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SVILO95425 2214 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 HCFC1P51610 2035 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 A0A1W2PPV4 95 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 DPRXA6NFQ7 191 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 PRSS46E5RG02 174 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 EIF3GO75821 320 aaKnown RBP eCLIP12.22□□□□□ -0.45
NUP54-217ENST00000514987 VENTXO95231 258 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 S100A12P80511 92 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 FABP9Q0Z7S8 132 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 RAB31Q13636 194 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 KIAA0141Q14154 515 aaPredicted RBP12.22□□□□□ -0.45
NUP54-217ENST00000514987 ZNF674Q2M3X9 581 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 C22orf34Q6ZV56 151 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 TCF23Q7RTU1 214 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 FAM216BQ8N7L0 139 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 ZNF383Q8NA42 475 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 DSCAMO60469 2012 aa12.21□□□□□ -0.45
NUP54-217ENST00000514987 RRHO14718 337 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 PDE6DO43924 150 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 IGHV3-7P01780 117 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 NPY1RP25929 384 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 ERVFRD-1P60508 538 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 RPS16P62249 146 aaKnown RBP12.21□□□□□ -0.46
NUP54-217ENST00000514987 TREML4Q6UXN2 200 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 ASCL5Q7RTU5 278 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 VKORC1L1Q8N0U8 176 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 Q8N7P7 452 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 SLC24A4Q8NFF2 622 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 LEAP2Q969E1 77 aa12.21□□□□□ -0.46
NUP54-217ENST00000514987 DIDO1Q9BTC0 2240 aaKnown RBP12.2□□□□□ -0.46
NUP54-217ENST00000514987 TRBV24-1A0A075B6N3 115 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 TRAV3A0A0B4J244 114 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 A0A1W2PPE3 182 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 F6UZH7 168 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 NDUFB7P17568 137 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 BSPH1Q075Z2 132 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 HNF4GQ14541 408 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 BSXQ3C1V8 233 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 ZNF343Q6P1L6 599 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 Q8NA96 180 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 OR4F5Q8NH21 305 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 FAM210BQ96KR6 192 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 OR4F4Q96R69 305 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 TMPRSS5Q9H3S3 457 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 SLC25A10Q9UBX3 287 aaPredicted RBP12.2□□□□□ -0.46
NUP54-217ENST00000514987 RAI1Q7Z5J4 1906 aaPredicted RBP12.2□□□□□ -0.46
NUP54-217ENST00000514987 DYSFO75923 2080 aa12.2□□□□□ -0.46
NUP54-217ENST00000514987 PPIAL4EA0A075B759 164 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 PPIAL4DF5H284 164 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 TMPRSS2O15393 492 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 PAGE4O60829 102 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 THBDP07204 575 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 IL6RP08887 468 aaPredicted RBP12.19□□□□□ -0.46
NUP54-217ENST00000514987 CXCL1P09341 107 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 PPIAL4FP0DN26 164 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 CCL8P80075 99 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 TBR1Q16650 682 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 DUX4L9Q6RFH8 374 aaPredicted RBP12.19□□□□□ -0.46
NUP54-217ENST00000514987 C1orf229Q6ZS94 237 aaPredicted RBP12.19□□□□□ -0.46
NUP54-217ENST00000514987 IQCF2Q8IXL9 164 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 ABHD12Q8N2K0 398 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 NANPQ8TBE9 248 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 ZCCHC14Q8WYQ9 949 aaKnown RBP12.19□□□□□ -0.46
NUP54-217ENST00000514987 PARLQ9H300 379 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 MS4A5Q9H3V2 200 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 SAP30LQ9HAJ7 183 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 SLC35D1Q9NTN3 355 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 PPIAL4AQ9Y536 164 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 OR51B2Q9Y5P1 312 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 PXMP4Q9Y6I8 212 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 URGCP-MRPS24S4R325 110 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 DOCK11Q5JSL3 2073 aa12.19□□□□□ -0.46
NUP54-217ENST00000514987 TGIF2-C20orf24A0A0A6YYL0 155 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 UPK2O00526 184 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 HMGB3O15347 200 aaKnown RBP12.18□□□□□ -0.46
NUP54-217ENST00000514987 CXorf1O96002 111 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 APOA2P02652 100 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 S100PP25815 95 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 GNG10P50151 68 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 RPL31P62899 125 aaKnown RBP12.18□□□□□ -0.46
NUP54-217ENST00000514987 PRCDQ00LT1 54 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 ADIRFQ15847 76 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 FAM71F2Q6NXP2 309 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 TEPPQ6URK8 271 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 ZNF833PQ6ZTB9 187 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 C8orf31Q8N9H6 132 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 OSR1Q8TAX0 266 aaPredicted RBP12.18□□□□□ -0.46
NUP54-217ENST00000514987 RPUSD4Q96CM3 377 aaKnown RBP12.18□□□□□ -0.46
NUP54-217ENST00000514987 ANAPC16Q96DE5 110 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 ZNF714Q96N38 554 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 MGST2Q99735 147 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 GGTLC1Q9BX51 225 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 BET1LQ9NYM9 111 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 LSM4Q9Y4Z0 139 aaKnown RBP12.18□□□□□ -0.46
NUP54-217ENST00000514987 C11orf94C9JXX5 98 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 TMEM178BH3BS89 294 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 YIF1AO95070 293 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 CT45A6P0DMU7 189 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 CT45A5P0DMU8 189 aa12.18□□□□□ -0.46
NUP54-217ENST00000514987 CT45A7P0DMV0 189 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms