RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SBSNQ6UWP8 590 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 C7orf65Q6ZTY9 151 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 SLC51BQ86UW2 128 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 TMEM86AQ8N2M4 240 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 OTUD6BQ8N6M0 293 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 OR2T27Q8NH04 317 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 JOSD2Q8TAC2 188 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 MBD3L1Q8WWY6 194 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 CCDC88CQ9P219 2028 aa0.91□□□□□ -2.26
VPS50-219ENST00000495039 A0A0D9SEW6 157 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 LINC00854A0A1B0GVQ3 168 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 F5H768 121 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 ORC5O43913 435 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 YEATS4O95619 227 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 PPBPP02775 128 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 IL9P15248 144 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 HAAOP46952 286 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 KRTAP10-4P60372 401 aaPredicted RBP0.9□□□□□ -2.27
VPS50-219ENST00000495039 RPL30P62888 115 aaKnown RBP0.9□□□□□ -2.27
VPS50-219ENST00000495039 DMTNQ08495 405 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 PPP1R1AQ13522 171 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 FAM78BQ5VT40 261 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 CST9Q5W186 159 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 C5orf46Q6UWT4 87 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 FP248Q71RG6 208 aaPredicted RBP0.9□□□□□ -2.27
VPS50-219ENST00000495039 RPS19BP1Q86WX3 136 aaKnown RBP0.9□□□□□ -2.27
VPS50-219ENST00000495039 Q8N402 240 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 TMEM251Q8N6I4 163 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 CXorf21Q9HAI6 301 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 XAGE1AQ9HD64 81 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 IMP3Q9NV31 184 aaKnown RBP0.9□□□□□ -2.27
VPS50-219ENST00000495039 FKBP14Q9NWM8 211 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 NAT8Q9UHE5 227 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 ANAPC10Q9UM13 185 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 PRELID1Q9Y255 219 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 POLR1DQ9Y2S0 133 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 KIF15Q9NS87 1388 aa0.9□□□□□ -2.27
VPS50-219ENST00000495039 SCAF11Q99590 1463 aaKnown RBP0.89□□□□□ -2.27
VPS50-219ENST00000495039 PIK3R4Q99570 1358 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 GOLGA8KD6RF30 607 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 GOLGA8MH3BSY2 632 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 CETN3O15182 167 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 SSNA1O43805 119 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 HLA-DRAP01903 254 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 IL3P08700 152 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 RPSAP08865 295 aaKnown RBP0.89□□□□□ -2.27
VPS50-219ENST00000495039 CD151P48509 253 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 MAP3K7CLP57077 242 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 ELOBQ15370 118 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 MOGQ16653 247 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 ACSM3Q53FZ2 586 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 UNQ6190/PRO20217Q6UXQ8 127 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 HIST2H3AQ71DI3 136 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 FAM9CQ8IZT9 166 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 UMODL1-AS1Q8N2C9 162 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 TBC1D19Q8N5T2 526 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 CHST6Q9GZX3 395 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 GPR84Q9NQS5 396 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 PLEKHJ1Q9NW61 149 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 DKKL1Q9UK85 242 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 C15orf41Q9Y2V0 281 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 COQ4Q9Y3A0 265 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 GREB1Q4ZG55 1949 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 NISCHQ9Y2I1 1504 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 MALRD1Q5VYJ5 2156 aa0.89□□□□□ -2.27
VPS50-219ENST00000495039 CUL9Q8IWT3 2517 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 IGKV3-7A0A075B6H7 116 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 MEIS3P1A6NDR6 274 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 DISC1C4P0D8 188 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 PLA2G10O15496 165 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 COCHO43405 550 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 MRPS14O60783 128 aaKnown RBP0.88□□□□□ -2.27
VPS50-219ENST00000495039 KRT75O95678 551 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 MSMBP08118 114 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 TFPTP0C1Z6 253 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 MSNP26038 577 aaKnown RBP0.88□□□□□ -2.27
VPS50-219ENST00000495039 CCR7P32248 378 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 RAB13P51153 203 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 TPM4P67936 248 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 ARHGAP11BQ3KRB8 267 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 FAM173BQ6P4H8 233 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 SSX8Q7RTT4 187 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 SLC22A24Q8N4F4 322 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 RPP25LQ8N5L8 163 aaKnown RBP0.88□□□□□ -2.27
VPS50-219ENST00000495039 TMEM161BQ8NDZ6 487 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 ACOT12Q8WYK0 555 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 CMTM5Q96DZ9 223 aa0.88□□□□□ -2.27
VPS50-219ENST00000495039 PCDH15Q96QU1 1955 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 SMARCA4P51532 1647 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 IGHV1-69-2A0A0G2JMI3 117 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 C1orf232A0A0U1RR37 186 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 TRAPPC13A5PLN9 417 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 ITGB1BP1O14713 200 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 PFDN6O15212 129 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 NSA2O95478 260 aaKnown RBP0.87□□□□□ -2.27
VPS50-219ENST00000495039 TYMSP04818 313 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 TPM3P06753 285 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 TRGC1P0CF51 173 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 CCL5P13501 91 aa0.87□□□□□ -2.27
VPS50-219ENST00000495039 ANP32AP39687 249 aaKnown RBP0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 145.9 ms