RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CCKARP32238 428 aa17.95■□□□□ 0.46
SHMT1-202ENST00000352886 PDLIM3Q53GG5 364 aaPredicted RBP17.95■□□□□ 0.46
SHMT1-202ENST00000352886 TCF23Q7RTU1 214 aa17.95■□□□□ 0.46
SHMT1-202ENST00000352886 GAFA1Q96PS6 74 aa17.95■□□□□ 0.46
SHMT1-202ENST00000352886 CCL13Q99616 98 aa17.95■□□□□ 0.46
SHMT1-202ENST00000352886 PAGE4O60829 102 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 GYPAP02724 150 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 TRGC2P03986 189 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 TGIF2LYQ8IUE0 185 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 ABHD12Q8N2K0 398 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 FAM216BQ8N7L0 139 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 DIRC2Q96SL1 478 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 PARLQ9H300 379 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 TNFSF4P23510 183 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 NDUFA6P56556 154 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 LYG1Q8N1E2 194 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 DOK5Q9P104 306 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 TCF19Q9Y242 345 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 MAP1BP46821 2468 aaKnown RBP17.94■□□□□ 0.46
SHMT1-202ENST00000352886 BSNQ9UPA5 3926 aa17.94■□□□□ 0.46
SHMT1-202ENST00000352886 TRAV38-1A0A0B4J264 116 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 YIF1AO95070 293 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 TREML4Q6UXN2 200 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 ZGRF1Q86YA3 2104 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 PRSS33Q8NF86 280 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 RHOVQ96L33 236 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 CTDSP1Q9GZU7 261 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 ATMQ13315 3056 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 ZFHX2Q9C0A1 2572 aaPredicted RBP17.93■□□□□ 0.46
SHMT1-202ENST00000352886 PRSS46E5RG02 174 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.93■□□□□ 0.46
SHMT1-202ENST00000352886 TMEM170AQ8WVE7 144 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 DCAF16Q9NXF7 216 aa17.93■□□□□ 0.46
SHMT1-202ENST00000352886 C15orf61A6NNL5 157 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BKO60814 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 OPN1MWP04001 364 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BJP06899 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 OPN1MW2P0DN77 364 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 OPN1MW3P0DN78 364 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BOP23527 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BBP33778 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 GNG10P50151 68 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BDP58876 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BCP62807 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 MRPS11P82912 194 aaKnown RBP17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST2H2BEQ16778 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BHQ93079 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BNQ99877 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HIST1H2BMQ99879 126 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 SEC14L6B5MCN3 397 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 MPDU1O75352 247 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 HOXA5P20719 270 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 THBS3P49746 956 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 RPL23P62829 140 aaKnown RBP17.92■□□□□ 0.46
SHMT1-202ENST00000352886 BSXQ3C1V8 233 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 OR4A47Q6IF82 309 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 ZNF788Q6ZQV5 615 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 ZNF383Q8NA42 475 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 OR13D1Q8NGV5 346 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 GGACTQ9BVM4 153 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 MS4A5Q9H3V2 200 aa17.92■□□□□ 0.46
SHMT1-202ENST00000352886 ZNF439Q8NDP4 499 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 IDI2-AS1Q9NZ38 188 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 TRGV8A0A0C4DH27 118 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 IRF2P14316 349 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 CCL8P80075 99 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 TMEM108Q6UXF1 575 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 NUP37Q8NFH4 326 aa17.91■□□□□ 0.46
SHMT1-202ENST00000352886 SNRNP40Q96DI7 357 aaKnown RBP17.91■□□□□ 0.46
SHMT1-202ENST00000352886 PATZ1Q9HBE1 687 aaKnown RBP17.91■□□□□ 0.46
SHMT1-202ENST00000352886 SMG1Q96Q15 3661 aaKnown RBP17.91■□□□□ 0.46
SHMT1-202ENST00000352886 A0A0G2JNJ9 132 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 A0A1W2PPV4 95 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 MMP23AO75900 390 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 TMPRSS3P57727 454 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 C16orf82Q7Z2V1 217 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 MGST2Q99735 147 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 Q9UFV3 132 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 TRBV24-1A0A075B6N3 115 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 ZNF729A6NN14 1252 aaPredicted RBP17.9■□□□□ 0.46
SHMT1-202ENST00000352886 C11orf94C9JXX5 98 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 MKRN2OSH3BPM6 223 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 OPRK1P41145 380 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 SPNS3Q6ZMD2 512 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 DOLPP1Q86YN1 238 aa17.9■□□□□ 0.46
SHMT1-202ENST00000352886 NEIL1Q96FI4 390 aaPredicted RBP17.9■□□□□ 0.46
SHMT1-202ENST00000352886 CDX1P47902 265 aaPredicted RBP17.89■□□□□ 0.45
SHMT1-202ENST00000352886 RAB1CQ92928 201 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 GGTLC1Q9BX51 225 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 PRRG2O14669 202 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 SOX15O60248 233 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 WFDC8Q8IUA0 241 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 ADTRPQ96IZ2 230 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 TMEM14BQ9NUH8 114 aa17.89■□□□□ 0.45
SHMT1-202ENST00000352886 FOXA2Q9Y261 457 aaPredicted RBP17.89■□□□□ 0.45
SHMT1-202ENST00000352886 C16orf97H3BN30 126 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 TMPRSS2O15393 492 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 TEX36Q5VZQ5 186 aa17.88■□□□□ 0.45
SHMT1-202ENST00000352886 MIC13Q5XKP0 118 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms