RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 LPAR6P43657 344 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 PMS2CLQ68D20 193 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 IGF2-ASQ6U949 168 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 PLSCR4Q9NRQ2 329 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 PEMTQ9UBM1 199 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 IGHV5-10-1A0A0J9YXX1 117 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 LTC4SQ16873 150 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 FGFRL1Q8N441 504 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TMEM252Q8N6L7 170 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SLC25A20O43772 301 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 INSM1Q01101 510 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 GAB4Q2WGN9 574 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TTC32Q5I0X7 151 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SPANXN1Q5VSR9 72 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 NEGR1Q7Z3B1 354 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 FOXA2Q9Y261 457 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 CLDN16Q9Y5I7 305 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 TRAV20A0A0B4J274 112 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TTRP02766 147 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 MYOGP15173 224 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 H1FXQ92522 213 aaKnown RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 SHISA9B4DS77 424 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SIVA1O15304 175 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 NPIPB7O75200 414 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 CLEC9AQ6UXN8 241 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 PRSS45Q7RTY3 260 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SDHCQ99643 169 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 ZNF355PQ9NSJ1 428 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SNURFLB1AK76 121 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 OR9G9P0C7N8 305 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SRSF6Q13247 344 aaKnown RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 C1orf61Q13536 156 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TP53INP2Q8IXH6 220 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 LYG1Q8N1E2 194 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TMEM238C9JI98 176 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 MMDQ15546 238 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TTTY10Q9BZA0 68 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SMIM30A4D0T7 59 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 PLXNB1O43157 2135 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 IGFBP3P17936 291 aaPredicted RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 NPPCP23582 126 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ZFP36L2P47974 494 aaKnown RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 TMEM88Q6PEY1 159 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 OR4D11Q8NGI4 311 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 RDH5Q92781 318 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 GPA33Q99795 319 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 FAM223BA6NKX1 122 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 FAM223AQ8IWN6 122 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 RBMY1BA6NDE4 496 aaKnown RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 RBMY1EA6NEQ0 496 aaKnown RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 M0R3E3 92 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 DNASE2O00115 360 aaPredicted RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 RBMY1DP0C7P1 496 aaKnown RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 RBMY1A1P0DJD3 496 aaKnown RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 RBMY1CP0DJD4 496 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ELLP55199 621 aaPredicted RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 C2orf68Q2NKX9 166 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 FNDC7Q5VTL7 733 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 DRAM1Q8N682 238 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ORAOV1Q8WV07 137 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 IL4P05112 153 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ATP5G1P05496 136 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 CFHR2P36980 270 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ATP5G3P48201 142 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ATP5G2Q06055 141 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 PDCD1Q15116 288 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 TMEM116Q8NCL8 245 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 TMEM171Q8WVE6 324 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 LRP4O75096 1905 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 OR3A4PP47883 348 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ERVK11-1P61568 191 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 TIAL1Q01085 375 aaKnown RBP eCLIP3.43□□□□□ -1.86
USH2A-201ENST00000307340 SRSF1Q07955 248 aaKnown RBP eCLIP3.43□□□□□ -1.86
USH2A-201ENST00000307340 AESQ08117 197 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 Q56UQ5 140 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 R3HDMLQ9H3Y0 253 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 MED29Q9NX70 200 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 CDIPTO14735 213 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ANOS1P23352 680 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 GATA4P43694 442 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 OR2B11Q5JQS5 317 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 WFDC5Q8TCV5 224 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 PLAC1Q9HBJ0 212 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 IGKV3D-11A0A0A0MRZ8 115 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ZNF816Q0VGE8 651 aaPredicted RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 EDDM3AQ14507 147 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 FAM53AQ6NSI3 398 aaPredicted RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 EEF1AKMT3Q96AZ1 226 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 UCN2Q96RP3 112 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 C8orf46Q8TAG6 207 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 GNB4Q9HAV0 340 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 HSPB7Q9UBY9 170 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 TNRC6BQ9UPQ9 1833 aaKnown RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 GPR183P32249 361 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 MFAP2P55001 183 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 ATXN7O15265 892 aaPredicted RBP3.43□□□□□ -1.86
USH2A-201ENST00000307340 PRSS1P07477 247 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 NUP37Q8NFH4 326 aa3.43□□□□□ -1.86
USH2A-201ENST00000307340 OR10AC1Q8NH08 325 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms