RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ZNF230Q9UIE0 474 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-211ENST00000597968 MRPS7Q9Y2R9 242 aaKnown RBP10.38□□□□□ -0.75
TRIM28-211ENST00000597968 PRELID3BQ9Y3B1 194 aa10.38□□□□□ -0.75
TRIM28-211ENST00000597968 ANKRD34BA5PLL1 514 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 TUSC2O75896 110 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 CSN3P07498 182 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 CD36P16671 472 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 MECP2P51608 486 aaKnown RBP10.37□□□□□ -0.75
TRIM28-211ENST00000597968 MRGPRG-AS1Q2M3A8 158 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 SPARTQ8N0X7 666 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 TTC9CQ8N5M4 171 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 NECAP1Q8NC96 275 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 IL17DQ8TAD2 202 aa10.37□□□□□ -0.75
TRIM28-211ENST00000597968 ELF5Q9UKW6 265 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-211ENST00000597968 MPPED1O15442 326 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 CRYZL1O95825 349 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 HLA-DQB1P01920 261 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 MAS1LP35410 378 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 ATP5G2Q06055 141 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 TNXAQ16473 311 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 HACD4Q5VWC8 232 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 C5orf30Q96GV9 206 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 LYSTQ99698 3801 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 AIFM2Q9BRQ8 373 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 TUBA4BQ9H853 241 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 ZNF257Q9Y2Q1 563 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 OR2W1Q9Y3N9 320 aa10.36□□□□□ -0.75
TRIM28-211ENST00000597968 STARD9Q9P2P6 4700 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 IGKV1D-8A0A087WSZ0 117 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.35□□□□□ -0.75
TRIM28-211ENST00000597968 LCE6AA0A183 80 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 LINC00473A8K010 186 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 PSMB9P28065 219 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 FGF9P31371 208 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-211ENST00000597968 SCAND1P57086 179 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 RHOGP84095 191 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 MSMO1Q15800 293 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 HAGHQ16775 308 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 CNIH2Q6PI25 160 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 TPRA1Q86W33 373 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 ACOT12Q8WYK0 555 aa10.35□□□□□ -0.75
TRIM28-211ENST00000597968 HSD17B10Q99714 261 aaKnown RBP10.35□□□□□ -0.75
TRIM28-211ENST00000597968 ZNF430Q9H8G1 570 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-211ENST00000597968 CSMD3Q7Z407 3707 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 NPIPB5A8MRT5 1133 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 NOTOA8MTQ0 251 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 LGALS9O00182 355 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 DHFRP00374 187 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 SAA1P0DJI8 122 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-211ENST00000597968 GABARAPL2P60520 117 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 KLK9Q2XQG4 91 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 CDNFQ49AH0 187 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 UBE2UQ5VVX9 321 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 KCTD9Q7L273 389 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 OR4S2Q8NH73 311 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 ATG5Q9H1Y0 275 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 OR51E2Q9H255 320 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 AKIP1Q9NQ31 210 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 TXNL4BQ9NX01 149 aaKnown RBP10.34□□□□□ -0.75
TRIM28-211ENST00000597968 SLC2A8Q9NY64 477 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 TECRQ9NZ01 308 aaKnown RBP10.34□□□□□ -0.75
TRIM28-211ENST00000597968 KLK9Q9UKQ9 250 aa10.34□□□□□ -0.75
TRIM28-211ENST00000597968 RBMX2Q9Y388 322 aaKnown RBP10.34□□□□□ -0.75
TRIM28-211ENST00000597968 J3QRK9 145 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 BMPR1BO00238 502 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 FCGR3BO75015 233 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 TMEM127O75204 238 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 FGF2P09038 288 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 EXOSC2Q13868 293 aaKnown RBP10.33□□□□□ -0.76
TRIM28-211ENST00000597968 LINC00322Q6ZN03 302 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-211ENST00000597968 ZNF66Q6ZN08 573 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 HAPLN4Q86UW8 402 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 FCGR1BQ92637 280 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 DCUN1D5Q9BTE7 237 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 RNF167Q9H6Y7 350 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 ZC4H2Q9NQZ6 224 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 DNAH1Q9P2D7 4330 aa10.33□□□□□ -0.76
TRIM28-211ENST00000597968 GGCTO75223 188 aaKnown RBP10.32□□□□□ -0.76
TRIM28-211ENST00000597968 TPPPO94811 219 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 HRASP01112 189 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 TRBV12-3P01733 135 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 CRYGCP07315 174 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 CLEC2LP0C7M8 214 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 HIST1H1BP16401 226 aaKnown RBP10.32□□□□□ -0.76
TRIM28-211ENST00000597968 KIR2DS2P43631 304 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 IDO2Q6ZQW0 420 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 GPHB5Q86YW7 130 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 ZBTB34Q8NCN2 500 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 TMEM167AQ8TBQ9 72 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 OR2A7Q96R45 310 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 ANXA10Q9UJ72 324 aa10.32□□□□□ -0.76
TRIM28-211ENST00000597968 A0A0A6YYH2 397 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 A6NJ64 397 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 RBMXL2O75526 392 aaKnown RBP10.31□□□□□ -0.76
TRIM28-211ENST00000597968 KBTBD11O94819 623 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 ZNF735P0CB33 412 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 GNG2P59768 71 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 ZNF45Q02386 682 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 C15orf32Q32M92 178 aa10.31□□□□□ -0.76
TRIM28-211ENST00000597968 PUSL1Q8N0Z8 303 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms