RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MYOZ3Q8TDC0 251 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 TSEN15Q8WW01 171 aaKnown RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 RTN4IP1Q8WWV3 396 aaPredicted RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 ST8SIA2Q92186 375 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 ARL11Q969Q4 196 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 TMEM106AQ96A25 262 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 S1PR3Q99500 378 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 SEC11CQ9BY50 192 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 ARL6Q9H0F7 186 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CHMP1AQ9HD42 196 aaPredicted RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 LIN7CQ9NUP9 197 aaKnown RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 RCC2Q9P258 522 aaKnown RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 MGAT4CQ9UBM8 478 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 CARHSP1Q9Y2V2 147 aaKnown RBP5.25□□□□□ -1.57
VPS53-213ENST00000572334 KCNIP3Q9Y2W7 256 aa5.25□□□□□ -1.57
VPS53-213ENST00000572334 TRAV8-7A0A075B6U6 113 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 TMEM30CPA0ZSE6 113 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 C12orf77C9JDV5 145 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 AP4M1O00189 453 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 SDCBPO00560 298 aaPredicted RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 TGOLN2O43493 480 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 ARL6IP5O75915 188 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 OR7C1O76099 320 aaPredicted RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 OR2A4O95047 310 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 IFNA17P01571 189 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 IGHG4P01861 327 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 MT-ND4LP03901 98 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 SERPINA2P20848 420 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 PSMB8P28062 276 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 CD1BP29016 333 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 PPIFP30405 207 aaKnown RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 ZNF93P35789 620 aaPredicted RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 CDX1P47902 265 aaPredicted RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 TAS2R60P59551 318 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 DGCR2P98153 550 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 FOXE3Q13461 319 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 PNLIPRP3Q17RR3 467 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 MPV17LQ2QL34 196 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 C4orf46Q504U0 113 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 RPL22L1Q6P5R6 122 aaKnown RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 TEX38Q6PEX7 206 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 MOB3BQ86TA1 216 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 FOXRED2Q8IWF2 684 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 ODF3L1Q8IXM7 274 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 OR2T10Q8NGZ9 312 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 STOML3Q8TAV4 291 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 GPR148Q8TDV2 347 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 MRPS24Q96EL2 167 aaKnown RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 RITA1Q96K30 269 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 PGLYRP3Q96LB9 341 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 OR2A7Q96R45 310 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 PRR25Q96S07 402 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 GPER1Q99527 375 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 S100A13Q99584 98 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 MCRIP2Q9BUT9 160 aaKnown RBP5.24□□□□□ -1.57
VPS53-213ENST00000572334 GPR61Q9BZJ8 451 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 C20orf85Q9H1P6 137 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 KLK15Q9H2R5 256 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 RNF167Q9H6Y7 350 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 TUBA4BQ9H853 241 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 CLEC2DQ9UHP7 191 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 ZNF580Q9UK33 172 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 RYR2Q92736 4967 aa5.24□□□□□ -1.57
VPS53-213ENST00000572334 TRBV5-7A0A0A0MS05 114 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 NCBP2LA6PVI3 153 aaKnown RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 LINC00587B1AMM8 73 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 SMLR1H3BR10 107 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 NUPL2O15504 423 aaKnown RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 EIF3GO75821 320 aaKnown RBP eCLIP5.23□□□□□ -1.57
VPS53-213ENST00000572334 MOSP00540 346 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 HBZP02008 142 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 IGF1P05019 195 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 CD2P06729 351 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 FCER2P06734 321 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 ELANEP08246 267 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 RCC1P18754 421 aaPredicted RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 CNTFRP26992 372 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 BDKRB2P30411 391 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 MECP2P51608 486 aaKnown RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 SCAND1P57086 179 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 SLC35B1P78383 322 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 BLOC1S1P78537 153 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 SSBP1Q04837 148 aaKnown RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 C19orf54Q5BKX5 351 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 DMKNQ6E0U4 476 aaPredicted RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 GLDNQ6ZMI3 551 aaPredicted RBP5.23□□□□□ -1.57
VPS53-213ENST00000572334 LINC00596Q86U02 117 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 ZFP41Q8N8Y5 198 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 OR1S1Q8NH92 325 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 OR1L1Q8NH94 360 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 RNF141Q8WVD5 230 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 THRSPQ92748 146 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 DPF1Q92782 380 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 GHSRQ92847 366 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 RAB24Q969Q5 203 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 SMIM19Q96E16 107 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 RAB3CQ96E17 227 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 TMEM68Q96MH6 324 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 MFFQ9GZY8 342 aa5.23□□□□□ -1.57
VPS53-213ENST00000572334 METTL9Q9H1A3 318 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 302.5 ms