RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RHOGP84095 191 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 CDK10Q15131 360 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 CDNFQ49AH0 187 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 TTC9CQ8N5M4 171 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 ZNF645Q8N7E2 425 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 ISOC1Q96CN7 298 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 BLOC1S6Q9UL45 172 aa12.99□□□□□ -0.33
CLN3-216ENST00000565316 MPPED1O15442 326 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 CREBL2O60519 120 aaPredicted RBP12.98□□□□□ -0.33
CLN3-216ENST00000565316 HLA-DQB1P01920 261 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 CTXN2P0C2S0 81 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 SAA1P0DJI8 122 aaPredicted RBP12.98□□□□□ -0.33
CLN3-216ENST00000565316 HSPA13P48723 471 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 ATP5G2Q06055 141 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 ZFAND6Q6FIF0 208 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 ADAMTSL5Q6ZMM2 481 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 GTSCR1Q86UQ5 136 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 MMD2Q8IY49 270 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 NECAP1Q8NC96 275 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 ACOT12Q8WYK0 555 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 SPIN2AQ99865 258 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 SPIN2BQ9BPZ2 258 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 ATG5Q9H1Y0 275 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 DCSTAMPQ9H295 470 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 PEMTQ9UBM1 199 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 OR2W1Q9Y3N9 320 aa12.98□□□□□ -0.33
CLN3-216ENST00000565316 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.97□□□□□ -0.33
CLN3-216ENST00000565316 SLC22A5O76082 557 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 IGLV2-14P01704 120 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 PRH1P02810 166 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 EXOSC2Q13868 293 aaKnown RBP12.97□□□□□ -0.33
CLN3-216ENST00000565316 HACD4Q5VWC8 232 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 C22orf42Q6IC83 251 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 VCX3BQ9H321 246 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 TUBA4BQ9H853 241 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 RBMX2Q9Y388 322 aaKnown RBP12.97□□□□□ -0.33
CLN3-216ENST00000565316 PRELID3BQ9Y3B1 194 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 DMRT1Q9Y5R6 373 aa12.97□□□□□ -0.33
CLN3-216ENST00000565316 EPPK1P58107 5090 aaKnown RBP12.96□□□□□ -0.33
CLN3-216ENST00000565316 FCGR3BO75015 233 aa12.96□□□□□ -0.33
CLN3-216ENST00000565316 RPL30P62888 115 aaKnown RBP12.96□□□□□ -0.33
CLN3-216ENST00000565316 EIF4EBP1Q13541 118 aaPredicted RBP12.96□□□□□ -0.33
CLN3-216ENST00000565316 C10orf55Q5SWW7 151 aa12.96□□□□□ -0.33
CLN3-216ENST00000565316 IZUMO2Q6UXV1 221 aa12.96□□□□□ -0.33
CLN3-216ENST00000565316 LINC00322Q6ZN03 302 aaPredicted RBP12.96□□□□□ -0.33
CLN3-216ENST00000565316 LAX1Q8IWV1 398 aa12.96□□□□□ -0.33
CLN3-216ENST00000565316 CNBD2Q96M20 576 aa12.96□□□□□ -0.33
CLN3-216ENST00000565316 ST6GALNAC5Q9BVH7 336 aa12.96□□□□□ -0.33
CLN3-216ENST00000565316 GAR1Q9NY12 217 aaKnown RBP12.96□□□□□ -0.33
CLN3-216ENST00000565316 PLECQ15149 4684 aaKnown RBP12.96□□□□□ -0.34
CLN3-216ENST00000565316 IGKV1D-13A0A0B4J2D9 117 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 NOTOA8MTQ0 251 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 TEX22C9J3V5 150 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 MRPS14O60783 128 aaKnown RBP12.95□□□□□ -0.34
CLN3-216ENST00000565316 TUSC2O75896 110 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 ACTL6BO94805 426 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 IGKV1-13P0DP09 117 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 NFYAP23511 347 aaPredicted RBP12.95□□□□□ -0.34
CLN3-216ENST00000565316 FGF9P31371 208 aaPredicted RBP12.95□□□□□ -0.34
CLN3-216ENST00000565316 FAM209BQ5JX69 171 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 UBE2UQ5VVX9 321 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 CNIH2Q6PI25 160 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 KCTD9Q7L273 389 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 SLC25A42Q86VD7 318 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 DCUN1D5Q9BTE7 237 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 OR51E2Q9H255 320 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 ZNF257Q9Y2Q1 563 aa12.95□□□□□ -0.34
CLN3-216ENST00000565316 MRPS7Q9Y2R9 242 aaKnown RBP12.95□□□□□ -0.34
CLN3-216ENST00000565316 ZNF785A8K8V0 405 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 J3QRK9 145 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 IFNA6P05013 189 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 CD36P16671 472 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 BRWD1-AS2P59051 145 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 GABARAPL2P60520 117 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 KLK9Q2XQG4 91 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 C15orf32Q32M92 178 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 CD300EQ496F6 205 aaPredicted RBP12.94□□□□□ -0.34
CLN3-216ENST00000565316 KCTD12Q96CX2 325 aaKnown RBP12.94□□□□□ -0.34
CLN3-216ENST00000565316 HSD17B10Q99714 261 aaKnown RBP12.94□□□□□ -0.34
CLN3-216ENST00000565316 KLK9Q9UKQ9 250 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 BIRC6Q9NR09 4857 aa12.94□□□□□ -0.34
CLN3-216ENST00000565316 NPIPB5A8MRT5 1133 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 SSX5O60225 188 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 SCGNO76038 276 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 IL6RP08887 468 aaPredicted RBP12.93□□□□□ -0.34
CLN3-216ENST00000565316 DEFB114Q30KQ6 69 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 VKORC1L1Q8N0U8 176 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 PUSL1Q8N0Z8 303 aaKnown RBP12.93□□□□□ -0.34
CLN3-216ENST00000565316 OR4S2Q8NH73 311 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 TMEM167AQ8TBQ9 72 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 NUDCD2Q8WVJ2 157 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 OR2A7Q96R45 310 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 TXNL4BQ9NX01 149 aaKnown RBP12.93□□□□□ -0.34
CLN3-216ENST00000565316 RAB26Q9ULW5 256 aa12.93□□□□□ -0.34
CLN3-216ENST00000565316 A0A1B0GW64 132 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 SMIM30A4D0T7 59 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 TMEM235A6NFC5 223 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 HMX3A6NHT5 357 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 E7EUB6 86 aa12.92□□□□□ -0.34
CLN3-216ENST00000565316 LGALS9O00182 355 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms