RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 C1orf174Q8IYL3 243 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 IGKV3D-15A0A087WSY6 115 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 NDUFB4O95168 129 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 HIST3H3Q16695 136 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 TIMM23BQ5SRD1 257 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 DOCK11Q5JSL3 2073 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 QRFPP83859 136 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 KLRB1Q12918 225 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 PMS2P11Q13670 270 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 SLC35E4Q6ICL7 350 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 FUT9Q9Y231 359 aa13.75□□□□□ -0.21
CUX1-213ENST00000549414 SLC25A17O43808 307 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 NAT1P18440 290 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 CSRP1P21291 193 aaKnown RBP13.74□□□□□ -0.21
CUX1-213ENST00000549414 CEACAM3P40198 252 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 OR5I1Q13606 314 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 IL22RA2Q969J5 263 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 NUP210Q8TEM1 1887 aaPredicted RBP13.74□□□□□ -0.21
CUX1-213ENST00000549414 J3QW42 95 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 ETFRF1Q6IPR1 90 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 SMIM15Q7Z3B0 74 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 GCSAMQ8N6F7 178 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 SFXN3Q9BWM7 321 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 QTRT1Q9BXR0 403 aaKnown RBP13.74□□□□□ -0.21
CUX1-213ENST00000549414 TCF19Q9Y242 345 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 FREM1Q5H8C1 2179 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 HSBP1O75506 76 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 IL18BPO95998 194 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 LHFPL1Q86WI0 220 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 LSM10Q969L4 123 aaKnown RBP13.74□□□□□ -0.21
CUX1-213ENST00000549414 ZNF586Q9NXT0 402 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 PCDH15Q96QU1 1955 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 PGA5P0DJD9 388 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 WDR25Q64LD2 544 aaPredicted RBP13.74□□□□□ -0.21
CUX1-213ENST00000549414 PLSCR2Q9NRY7 297 aa13.74□□□□□ -0.21
CUX1-213ENST00000549414 TRAV20A0A0B4J274 112 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 F2RL2O00254 374 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 COX6B1P14854 86 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 SLC35B1P78383 322 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 MARVELD3Q96A59 401 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 TMEM167BQ9NRX6 74 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 ZDHHC8Q9ULC8 765 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 MRPL54Q6P161 138 aaKnown RBP13.73□□□□□ -0.21
CUX1-213ENST00000549414 ZNF785A8K8V0 405 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 PTBP3O95758 552 aaKnown RBP13.73□□□□□ -0.21
CUX1-213ENST00000549414 ASCL3Q9NQ33 180 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 JPT1Q9UK76 154 aa13.73□□□□□ -0.21
CUX1-213ENST00000549414 C20orf202A1L168 122 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 GATCO43716 136 aaKnown RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 PRB3Q04118 309 aaPredicted RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 C16orf82Q7Z2V1 217 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 IDI2-AS1Q9NZ38 188 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 AMMECR1Q9Y4X0 333 aaPredicted RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 TECTAO75443 2155 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 TRBV6-7A0A0A0MS04 114 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 RANP62826 216 aaKnown RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 PDPNQ86YL7 162 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 REG1AP05451 166 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 CD40P25942 277 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 OR4F17Q8NGA8 305 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 PROK2Q9HC23 129 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 PRR14LQ5THK1 2151 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 IQCF6A8MYZ5 107 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 CXorf1O96002 111 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 HSPB1P04792 205 aaKnown RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 OTX1P32242 354 aaPredicted RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 RNFT1Q5M7Z0 435 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 CLEC2AQ6UVW9 174 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 RCC1LQ96I51 464 aaKnown RBP13.72□□□□□ -0.21
CUX1-213ENST00000549414 SMIM8Q96KF7 97 aa13.72□□□□□ -0.21
CUX1-213ENST00000549414 HELTA6NFD8 242 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 M0QZ24 198 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 TRGC2P03986 189 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 SCGB2A2Q13296 93 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 IL19Q9UHD0 177 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 FAM3BP58499 235 aaPredicted RBP13.71□□□□□ -0.21
CUX1-213ENST00000549414 HSPE1P61604 102 aaKnown RBP13.71□□□□□ -0.21
CUX1-213ENST00000549414 RPL8P62917 257 aaKnown RBP13.71□□□□□ -0.21
CUX1-213ENST00000549414 SPACA3Q8IXA5 215 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 SIRT7Q9NRC8 400 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 RNF115Q9Y4L5 304 aa13.71□□□□□ -0.21
CUX1-213ENST00000549414 B4DEV8 164 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 FAM90A26D6RGX4 464 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 ZNF343Q6P1L6 599 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 TOMM20LQ6UXN7 152 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 LRP11Q86VZ4 500 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 POM121Q96HA1 1249 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 HS3ST6Q96QI5 342 aa13.71□□□□□ -0.22
CUX1-213ENST00000549414 GNG7O60262 68 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 ATP5J2P56134 94 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 C10orf113Q5VZT2 155 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 ASCL5Q7RTU5 278 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 SGMS2Q8NHU3 365 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 AAMDCQ9H7C9 122 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 KIAA1671Q9BY89 1806 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 SS18L1O75177 396 aaPredicted RBP13.7□□□□□ -0.22
CUX1-213ENST00000549414 BRS3P32247 399 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 WDR82Q6UXN9 313 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 TCTEX1D1Q8N7M0 179 aa13.7□□□□□ -0.22
CUX1-213ENST00000549414 MED13Q9UHV7 2174 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms