RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TEX22C9J3V5 150 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 TNFSF12O43508 249 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 GABARAPO95166 117 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 BRI3O95415 125 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 PRH1P02810 166 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 RRASP10301 218 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 ELK1P19419 428 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 GNRHRP30968 328 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 RFX2P48378 723 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 TPPP2P59282 170 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 TMEM267Q0VDI3 215 aaPredicted RBP8.18□□□□□ -1.1
CD44-227ENST00000528086 RTL8BQ17RB0 113 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 C11orf87Q6NUJ2 197 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 IL34Q6ZMJ4 242 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 ZNF818PQ6ZRF7 136 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 KCTD9Q7L273 389 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 ANKRD13BQ86YJ7 626 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 POC5Q8NA72 575 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 OR5AP2Q8NGF4 316 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 OSR1Q8TAX0 266 aaPredicted RBP8.18□□□□□ -1.1
CD44-227ENST00000528086 GPX8Q8TED1 209 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 SECTM1Q8WVN6 248 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 GIMAP1Q8WWP7 306 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 SRSF12Q8WXF0 261 aaKnown RBP8.18□□□□□ -1.1
CD44-227ENST00000528086 PRR25Q96S07 402 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 MCRIP2Q9BUT9 160 aaKnown RBP8.18□□□□□ -1.1
CD44-227ENST00000528086 DIABLOQ9NR28 239 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 DMRT1Q9Y5R6 373 aa8.18□□□□□ -1.1
CD44-227ENST00000528086 TRAV3A0A0B4J244 114 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 HMX3A6NHT5 357 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 HPGDSO60760 199 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 TRGV3P03979 118 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 OR8U8P0C7N1 319 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 CDK10Q15131 360 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 ACSM6Q6P461 480 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 DHRS11Q6UWP2 260 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 CROCCP3Q8IVE0 287 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 KCTD12Q96CX2 325 aaKnown RBP8.17□□□□□ -1.1
CD44-227ENST00000528086 S100A16Q96FQ6 103 aaKnown RBP8.17□□□□□ -1.1
CD44-227ENST00000528086 HSD17B10Q99714 261 aaKnown RBP8.17□□□□□ -1.1
CD44-227ENST00000528086 TINAGL1Q9GZM7 467 aaPredicted RBP8.17□□□□□ -1.1
CD44-227ENST00000528086 FXYD6Q9H0Q3 95 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 MIXL1Q9H2W2 232 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 COMMD3Q9UBI1 195 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 TENM3Q9P273 2699 aa8.17□□□□□ -1.1
CD44-227ENST00000528086 TRBV9A0A0B4J1U6 114 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 LINC01619G3V211 115 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 SULT1C2O00338 296 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 OVOL1O14753 267 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 CNIH1O95406 144 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 APOA1P02647 267 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 PMP2P02689 132 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 HSPB1P04792 205 aaKnown RBP8.16□□□□□ -1.1
CD44-227ENST00000528086 FXYD4P59646 89 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 ARPC4P59998 168 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 DGCR2P98153 550 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 MSMO1Q15800 293 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 TNXAQ16473 311 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 VMA21Q3ZAQ7 101 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 TMEM69Q5SWH9 247 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 C9orf66Q5T8R8 295 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 GPR107Q5VW38 600 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 PYHIN1Q6K0P9 492 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 ZNF343Q6P1L6 599 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 ZNF66Q6ZN08 573 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 HAPLN4Q86UW8 402 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 TMEM167AQ8TBQ9 72 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 TCTEX1D2Q8WW35 142 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 FANCD2OSQ96PS1 177 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 SLC5A7Q9GZV3 580 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 SLA2Q9H6Q3 261 aa8.16□□□□□ -1.1
CD44-227ENST00000528086 ANKRD34BA5PLL1 514 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 H3BUA1 57 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 SLC22A5O76082 557 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 KBTBD11O94819 623 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 ZNF735P0CB33 412 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 AREGP15514 252 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 ECI1P42126 302 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 CBX5P45973 191 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 SPCS2Q15005 226 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 POU2AF1Q16633 256 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 KLK9Q2XQG4 91 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 ZNF585BQ52M93 769 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 OR4A47Q6IF82 309 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 ADAMTSL5Q6ZMM2 481 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 TTC9CQ8N5M4 171 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 MOB3AQ96BX8 217 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 GPR61Q9BZJ8 451 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 VCX3AQ9NNX9 186 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 AKIP1Q9NQ31 210 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 EHFQ9NZC4 300 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 KLK9Q9UKQ9 250 aa8.15□□□□□ -1.1
CD44-227ENST00000528086 RBFOX2O43251 390 aaKnown RBP eCLIP8.14□□□□□ -1.11
CD44-227ENST00000528086 PGLYRP1O75594 196 aaPredicted RBP8.14□□□□□ -1.11
CD44-227ENST00000528086 OR2A4O95047 310 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 S1PR2O95136 353 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 OR9G9P0C7N8 305 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 EDN2P20800 178 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 HLA-DMAP28067 261 aa8.14□□□□□ -1.11
CD44-227ENST00000528086 PRSS3P35030 304 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms