RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF407Q9C0G0 2248 aa3.47□□□□□ -1.85
NUP54-215ENST00000514313 IGHV1-69-2A0A0G2JMI3 117 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 INMT-MINDY4F8WBC2 141 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 CBR1P16152 277 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 SULT1A1P50225 295 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 SPCS3P61009 180 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 MEF2BQ02080 365 aaPredicted RBP3.46□□□□□ -1.86
NUP54-215ENST00000514313 FADDQ13158 208 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 TNFAIP8L3Q5GJ75 292 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 CLDND2Q8NHS1 167 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 PECRQ9BY49 303 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 TMEM222Q9H0R3 208 aa3.46□□□□□ -1.86
NUP54-215ENST00000514313 A0A1W2PQL4 384 aaPredicted RBP3.45□□□□□ -1.86
NUP54-215ENST00000514313 EEF1E1-BLOC1S5C9J1V9 151 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 LST1O00453 97 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 TRAPPC3O43617 180 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 TCRBP04435 133 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 OR5G3P0C626 314 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 SLCO1A2P46721 670 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 RPL27AP46776 148 aaKnown RBP3.45□□□□□ -1.86
NUP54-215ENST00000514313 XCL1P47992 114 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 RAP1GDS1P52306 607 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 SLC22A24Q8N4F4 322 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 OR13C8Q8NGS7 320 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 ANKRD7Q92527 254 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 TTTY13Q9BZ97 58 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 VPS29Q9UBQ0 182 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 ATG2BQ96BY7 2078 aa3.45□□□□□ -1.86
NUP54-215ENST00000514313 ABCC12Q96J65 1359 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 C11orf86A6NJI1 115 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 A8MUN3 132 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 ZNF189O75820 626 aaPredicted RBP3.44□□□□□ -1.86
NUP54-215ENST00000514313 KRT75O95678 551 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 OMPP47874 163 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 IFITM2Q01629 132 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 SMCR5Q8TEV8 140 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 MIEN1Q9BRT3 115 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 TAAR3PQ9P1P4 343 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 PSORS1C2Q9UIG4 136 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 PRELID1Q9Y255 219 aa3.44□□□□□ -1.86
NUP54-215ENST00000514313 DICER1Q9UPY3 1922 aaKnown RBP3.43□□□□□ -1.86
NUP54-215ENST00000514313 A0A1W2PQD3 144 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 TMEM235A6NFC5 223 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 KPNA3O00505 521 aaPredicted RBP3.43□□□□□ -1.86
NUP54-215ENST00000514313 FUSP35637 526 aaKnown RBP eCLIP3.43□□□□□ -1.86
NUP54-215ENST00000514313 RANP62826 216 aaKnown RBP3.43□□□□□ -1.86
NUP54-215ENST00000514313 C1orf158Q8N1D5 194 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 ZNF471Q9BX82 626 aaPredicted RBP3.43□□□□□ -1.86
NUP54-215ENST00000514313 FAM96AQ9H5X1 160 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 AK3Q9UIJ7 227 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 ANGPT4Q9Y264 503 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 ZFYVE9O95405 1425 aa3.43□□□□□ -1.86
NUP54-215ENST00000514313 PLA2G10O15496 165 aa3.42□□□□□ -1.86
NUP54-215ENST00000514313 GNRH2O43555 120 aa3.42□□□□□ -1.86
NUP54-215ENST00000514313 FGF6P10767 208 aa3.42□□□□□ -1.86
NUP54-215ENST00000514313 ALOX5APP20292 161 aa3.42□□□□□ -1.86
NUP54-215ENST00000514313 RPL30P62888 115 aaKnown RBP3.42□□□□□ -1.86
NUP54-215ENST00000514313 GLT6D1Q7Z4J2 308 aa3.42□□□□□ -1.86
NUP54-215ENST00000514313 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.42□□□□□ -1.86
NUP54-215ENST00000514313 A0A1B0GV50 99 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 TMEM210A6NLX4 147 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 CLDN24A6NM45 220 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 TXNDC9O14530 226 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 ZNF728P0DKX0 622 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 AP3S2P59780 193 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 KRTAP5-5Q701N2 237 aaPredicted RBP3.41□□□□□ -1.86
NUP54-215ENST00000514313 CLDN22Q8N7P3 220 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 OR1L8Q8NGR8 309 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 CNBD2Q96M20 576 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 FAM215AQ9Y5M1 114 aa3.41□□□□□ -1.86
NUP54-215ENST00000514313 LTBP2Q14767 1821 aa3.4□□□□□ -1.86
NUP54-215ENST00000514313 TMEM269A0A1B0GVZ9 245 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 A0A1B0GW54 56 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 TMEM114B3SHH9 223 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 CHP2O43745 196 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 NPYP01303 97 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 CTXN2P0C2S0 81 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 CD24P25063 80 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 TAS2R20P59543 309 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 MRPS15P82914 257 aaKnown RBP3.4□□□□□ -1.87
NUP54-215ENST00000514313 STX5Q13190 355 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 ZNF181Q2M3W8 571 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 KLK6Q92876 244 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 PPP1R2P1Q96PQ5 205 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 CMTM6Q9NX76 183 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 SLC22A13Q9Y226 551 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 ZNF337Q9Y3M9 751 aa3.4□□□□□ -1.87
NUP54-215ENST00000514313 DCCP43146 1447 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 MUC21A0A0G2JKD1 596 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 MUC21A0A140T8X8 626 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 HAAOP46952 286 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 IDH3GP51553 393 aaPredicted RBP3.39□□□□□ -1.87
NUP54-215ENST00000514313 FXYD7P58549 80 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 ZNF675Q8TD23 568 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 PRAP1Q96NZ9 151 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 PKIGQ9Y2B9 76 aa3.39□□□□□ -1.87
NUP54-215ENST00000514313 CD79AP11912 226 aa3.38□□□□□ -1.87
NUP54-215ENST00000514313 KCNE1P15382 129 aa3.38□□□□□ -1.87
NUP54-215ENST00000514313 CAV1Q03135 178 aa3.38□□□□□ -1.87
NUP54-215ENST00000514313 ACOT6Q3I5F7 207 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms