RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CEACAM6P40199 344 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 BPIFB3P59826 476 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TIGITQ495A1 244 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 C9orf106Q8NAJ2 232 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM54Q969K7 222 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RBKSQ9H477 322 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SDF2L1Q9HCN8 221 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MPPED1O15442 326 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 VDAC1P21796 283 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SRP14P37108 136 aaKnown RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SLC38A11Q08AI6 406 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 LEAP2Q969E1 77 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NABP1Q96AH0 204 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM106BQ9NUM4 274 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CEP192Q8TEP8 1941 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 KIR2DS1A0A191URI9 304 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRD5 423 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRF3 423 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRM7 423 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CRYM-AS1A6NIL9 109 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 K7N7A8 449 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 KIR2DS4P43632 304 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 B3GALT5-AS1P59052 145 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 KIR2DS1Q14954 304 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SLC25A53Q5H9E4 307 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 FDX2Q6P4F2 183 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RNASEKQ6P5S7 137 aaKnown RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MOGAT3Q86VF5 341 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GAPTQ8N292 157 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM170AQ8WVE7 144 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 HS3ST6Q96QI5 342 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 P2RX4Q99571 388 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 WDR61Q9GZS3 305 aaKnown RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ZNF430Q9H8G1 570 aaPredicted RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RPRMQ9NS64 109 aa9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CISD1Q9NZ45 108 aaKnown RBP9.14□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MALRD1Q5VYJ5 2156 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQV5 110 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SH2D1BO14796 132 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SLC25A6P12236 298 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 FBLN7Q53RD9 439 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TGIF2LYQ8IUE0 185 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MTCH1Q9NZJ7 389 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DMXL1Q9Y485 3027 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CHD3Q12873 2000 aaKnown RBP9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ABCA2Q9BZC7 2435 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM14DPA8MWL7 114 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GFRA3O60609 400 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TDGF1P13385 188 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CDC34P49427 236 aaPredicted RBP9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 C10orf128Q5T292 105 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NUDT10Q8NFP7 164 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CLDND2Q8NHS1 167 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DECR2Q9NUI1 292 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGKV1-27A0A075B6S5 117 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ZNF503-AS2A6NEH8 195 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GAGE10A6NGK3 116 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CA11O75493 328 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TBC1D26Q86UD7 250 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GBGT1Q8N5D6 347 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR1K1Q8NGR3 316 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 WFDC1Q9HC57 220 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CACNG5Q9UF02 275 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 POLDIP2Q9Y2S7 368 aa9.13□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGKV1-12A0A0C4DH73 117 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 VSTM5A8MXK1 200 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ITGB1BP1O14713 200 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TNFSF13O75888 250 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGKV1D-12P01611 117 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGFBP3P17936 291 aaPredicted RBP9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 UCP2P55851 309 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GFRA1P56159 465 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RNF2Q99496 336 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DCTN5Q9BTE1 182 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 WNT10AQ9GZT5 417 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PNRC2Q9NPJ4 139 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PSG11Q9UQ72 335 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CFAP47Q6ZTR5 3102 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ENSAO43768 121 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 KBTBD11O94819 623 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TCL1AP56279 114 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GAGE1Q13065 139 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 HIST3H3Q16695 136 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NIT1Q86X76 327 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DTX1Q86Y01 620 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 WDYHV1Q96HA8 205 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 BOD1Q96IK1 185 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TRDCB7Z8K6 153 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RBM11P57052 281 aaKnown RBP9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 UNQ5815/PRO19632Q6UWF5 114 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR8G5Q8NG78 346 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TAAR3PQ9P1P4 343 aa9.12□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 POLQO75417 2590 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGLV3-32A0A0A0MS00 114 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGSF23A1L1A6 192 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 K7EM74 188 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 M0R2Z0 102 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR7C2O60412 319 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PPYP01298 95 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IGHV1-2P23083 117 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms