RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	ARHGAP5-AS1	Q96IT6	56 aa		13.18	□□□□□ -0.3
NUP50-218	ENST00000493456	PECR	Q9BY49	303 aa		13.18	□□□□□ -0.3
NUP50-218	ENST00000493456	ZNF430	Q9H8G1	570 aa	Predicted RBP	13.18	□□□□□ -0.3
NUP50-218	ENST00000493456	MLX	Q9UH92	298 aa		13.18	□□□□□ -0.3
NUP50-218	ENST00000493456	DEDD	O75618	318 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	ARL3	P36405	182 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	MRPS15	P82914	257 aa	Known RBP	13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	CDK10	Q15131	360 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	FAM106A	Q4KMX7	169 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	HSD17B12	Q53GQ0	312 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	TM4SF20	Q53R12	229 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	CEACAM19	Q7Z692	300 aa		13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	RBM7	Q9Y580	266 aa	Known RBP	13.17	□□□□□ -0.3
NUP50-218	ENST00000493456	TRBV6-7	A0A0A0MS04	114 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	TRAV25	A0A0B4J276	109 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	UBE2C	O00762	179 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	SCAF4	O95104	1147 aa	Known RBP	13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	SAA1	P0DJI8	122 aa	Predicted RBP	13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	DUT	P33316	252 aa	Known RBP	13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	NANOGP1	Q8N7R0	232 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	UXS1	Q8NBZ7	420 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	OR56B1	Q8NGI3	324 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	CYGB	Q8WWM9	190 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	PLGRKT	Q9HBL7	147 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	S100A14	Q9HCY8	104 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	FBXL7	Q9UJT9	491 aa		13.16	□□□□□ -0.3
NUP50-218	ENST00000493456	ZNF320	A2RRD8	509 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	NPIPB5	A8MRT5	1133 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	SLC17A2	O00624	439 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	CD3G	P09693	182 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	P2RY14	Q15391	338 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	DEFB135	Q30KP9	77 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	IGSF11	Q5DX21	431 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	C10orf55	Q5SWW7	151 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	BTNL8	Q6UX41	500 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	OR1L6	Q8NGR2	347 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	MARC2	Q969Z3	335 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	CCDC140	Q96MF4	163 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	SELENOK	Q9Y6D0	94 aa		13.15	□□□□□ -0.3
NUP50-218	ENST00000493456	LINC00473	A8K010	186 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	CDK1	P06493	297 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	UCHL1	P09936	223 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	PLAC9	Q5JTB6	97 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	CLEC19A	Q6UXS0	136 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	RBPMS2	Q6ZRY4	209 aa	Known RBP	13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	AHSA2	Q719I0	299 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	GATAD1	Q8WUU5	269 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	PHLDA1	Q8WV24	401 aa	Predicted RBP	13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	GINS4	Q9BRT9	223 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	CENPO	Q9BU64	300 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	PSORS1C1	Q9UIG5	152 aa		13.14	□□□□□ -0.31
NUP50-218	ENST00000493456	KIR2DL5B	A0A0G2JN68	375 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	KIR2DL5B	A0A0G2JPC4	375 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	DPPA5	A6NC42	116 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	ERICH4	A6NGS2	130 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	TEX22	C9J3V5	150 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	DHFR	P00374	187 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	FCGR3A	P08637	254 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	GSTT2	P0CG29	244 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	GSTT2B	P0CG30	244 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	RANBP1	P43487	201 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	SLC38A6	Q8IZM9	456 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	KIR2DL5A	Q8N109	375 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	KIR2DL5B	Q8NHK3	375 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	EEF1AKMT3	Q96AZ1	226 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	RNF183	Q96D59	192 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	PKHD1	P08F94	4074 aa		13.13	□□□□□ -0.31
NUP50-218	ENST00000493456	HMX3	A6NHT5	357 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	IGHV3-23	P01764	117 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	C8orf88	P0DMB2	117 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	RAB11B	Q15907	218 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	OR2C3	Q8N628	320 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	VSTM2A	Q8TAG5	236 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	SPAG8	Q99932	426 aa	Predicted RBP	13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	DCUN1D5	Q9BTE7	237 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	MND1	Q9BWT6	205 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	PLCXD1	Q9NUJ7	323 aa		13.12	□□□□□ -0.31
NUP50-218	ENST00000493456	CRYGC	P07315	174 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	HIST1H1B	P16401	226 aa	Known RBP	13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	GAL	P22466	123 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	KLK9	Q2XQG4	91 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	STPG3	Q8N7X2	389 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	FANCD2OS	Q96PS1	177 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	FYTTD1	Q96QD9	318 aa	Known RBP	13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	GFI1	Q99684	422 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	OR51E2	Q9H255	320 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	SLC2A9	Q9NRM0	540 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	MRPL27	Q9P0M9	148 aa	Known RBP	13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	KLK9	Q9UKQ9	250 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	MRPS7	Q9Y2R9	242 aa	Known RBP	13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	PRELID3B	Q9Y3B1	194 aa		13.11	□□□□□ -0.31
NUP50-218	ENST00000493456	FAT2	Q9NYQ8	4349 aa		13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	TRBV7-1	A0A0A6YYK4	115 aa		13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	FCGR3B	O75015	233 aa		13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	MAS1L	P35410	378 aa		13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	RPL27A	P46776	148 aa	Known RBP	13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	ELL	P55199	621 aa	Predicted RBP	13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	ARFRP1	Q13795	201 aa		13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	C19orf35	Q6ZS72	473 aa		13.1	□□□□□ -0.31
NUP50-218	ENST00000493456	DHRSX	Q8N5I4	330 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms