RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 TMEM235A6NFC5 223 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 H0Y980 276 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 J3QRK9 145 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 FCGR3BO75015 233 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 TRBV12-3P01733 135 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 CD36P16671 472 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 TATDN3Q17R31 274 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 RPEL1Q2QD12 228 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 CNIH2Q6PI25 160 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 KCTD9Q7L273 389 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 SGPP2Q8IWX5 399 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 MMD2Q8IY49 270 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 TM2D3Q9BRN9 247 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 DCUN1D5Q9BTE7 237 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 C19orf73Q9NVV2 129 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 SIGLEC8Q9NYZ4 499 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 DAPK2Q9UIK4 370 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 ADAM30Q9UKF2 790 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 SSR3Q9UNL2 185 aa12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 MRPS7Q9Y2R9 242 aaKnown RBP12.64□□□□□ -0.39
CCDC28B-204ENST00000469003 FAM223BA6NKX1 122 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 ACTL6BO94805 426 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 CSN3P07498 182 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 GNG2P59768 71 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 RPL30P62888 115 aaKnown RBP12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 RHOGP84095 191 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 SFXN4Q6P4A7 337 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 FAM223AQ8IWN6 122 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 LGALS14Q8TCE9 139 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 SNAPC3Q92966 411 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 SPIN2AQ99865 258 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 SPIN2BQ9BPZ2 258 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 YTHDF1Q9BYJ9 559 aaKnown RBP12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 AKIP1Q9NQ31 210 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 RRP15Q9Y3B9 282 aaKnown RBP12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 RYR2Q92736 4967 aa12.63□□□□□ -0.39
CCDC28B-204ENST00000469003 TRBV9A0A0B4J1U6 114 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 IGKV1D-13A0A0B4J2D9 117 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 SSX5O60225 188 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 TUSC2O75896 110 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 OR2A4O95047 310 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 ATP6V1G2O95670 118 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 IGLV2-14P01704 120 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 IGKV1-13P0DP09 117 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 ZNF45Q02386 682 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 OR2B11Q5JQS5 317 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 CASC10Q5T4H9 136 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 TTC9CQ8N5M4 171 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 HSD17B10Q99714 261 aaKnown RBP12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 Q9H521 79 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 ANXA10Q9UJ72 324 aa12.62□□□□□ -0.39
CCDC28B-204ENST00000469003 DNAH7Q8WXX0 4024 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 PRH1P02810 166 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 SCAND1P57086 179 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 ATP5G2Q06055 141 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 EIF4EBP1Q13541 118 aaPredicted RBP12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 EXOSC2Q13868 293 aaKnown RBP12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 C10orf55Q5SWW7 151 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 LCN12Q6JVE5 192 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 SLC25A42Q86VD7 318 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 Q8N402 240 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 OR4S2Q8NH73 311 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 THAP7Q9BT49 309 aaPredicted RBP12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 OR51E2Q9H255 320 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 RHBDL2Q9NX52 303 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 PEMTQ9UBM1 199 aa12.61□□□□□ -0.39
CCDC28B-204ENST00000469003 BMPR1BO00238 502 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 AIREO43918 545 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 SDC2P34741 201 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 NECAP1Q8NC96 275 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 VSTM2AQ8TAG5 236 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 TCTEX1D2Q8WW35 142 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 CITED4Q96RK1 184 aa12.6□□□□□ -0.39
CCDC28B-204ENST00000469003 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 KBTBD11O94819 623 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 MECP2P51608 486 aaKnown RBP12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 FAM209BQ5JX69 171 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 ZNF773Q6PK81 442 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 ZNF66Q6ZN08 573 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 GTSCR1Q86UQ5 136 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 VKORC1L1Q8N0U8 176 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 PUSL1Q8N0Z8 303 aaKnown RBP12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 MFSD4AQ8N468 514 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 OR2K2Q8NGT1 345 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 TMEM167AQ8TBQ9 72 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 OR2A7Q96R45 310 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 SPATA2Q9UM82 520 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 ZNF257Q9Y2Q1 563 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 ETV7Q9Y603 341 aa12.59□□□□□ -0.39
CCDC28B-204ENST00000469003 HMX3A6NHT5 357 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 TEX22C9J3V5 150 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 CLEC2LP0C7M8 214 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 LYL1P12980 280 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 MAS1LP35410 378 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 RPL27AP46776 148 aaKnown RBP12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 BRWD1-AS2P59051 145 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 MXD1Q05195 221 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 C15orf32Q32M92 178 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 BEST4Q8NFU0 473 aa12.58□□□□□ -0.4
CCDC28B-204ENST00000469003 OR5H6Q8NGV6 325 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms