RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 IGHV4-30-4P0DP06 118 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 FGF9P31371 208 aaPredicted RBP5.42□□□□□ -1.54
VPS41-208ENST00000448833 DUTP33316 252 aaKnown RBP5.42□□□□□ -1.54
VPS41-208ENST00000448833 MAS1LP35410 378 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 SCAND1P57086 179 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 GABARAPL2P60520 117 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 ATP5G2Q06055 141 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 PJVKQ0ZLH3 352 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 CDK10Q15131 360 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 TNXAQ16473 311 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 PRSS8Q16651 343 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 CASC10Q5T4H9 136 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 HACD4Q5VWC8 232 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 CNIH2Q6PI25 160 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 OVCH2Q7RTZ1 564 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 H1FOOQ8IZA3 346 aaPredicted RBP5.42□□□□□ -1.54
VPS41-208ENST00000448833 ZNF645Q8N7E2 425 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 NECAP1Q8NC96 275 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 ACOT12Q8WYK0 555 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 DDB2Q92466 427 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 FCGR1BQ92637 280 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 ISOC1Q96CN7 298 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 HSD17B10Q99714 261 aaKnown RBP5.42□□□□□ -1.54
VPS41-208ENST00000448833 SPATA25Q9BR10 227 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 TM2D3Q9BRN9 247 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 KRTAP4-8Q9BYQ9 185 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 Q9H521 79 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 C19orf73Q9NVV2 129 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 NKX1-2Q9UD57 310 aaPredicted RBP5.42□□□□□ -1.54
VPS41-208ENST00000448833 RAB26Q9ULW5 256 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 KCNK7Q9Y2U2 307 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 OR2W1Q9Y3N9 320 aa5.42□□□□□ -1.54
VPS41-208ENST00000448833 DPPA5A6NC42 116 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 TRIM64CA6NLI5 447 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 NOTOA8MTQ0 251 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 CYB5BO43169 146 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 HRASP01112 189 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 HLA-DQB1P01920 261 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 KIR2DS2P43631 304 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 SYNJ2BPP57105 145 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 LINC00205P59089 165 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 ARPC4P59998 168 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 MSMO1Q15800 293 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 CDNFQ49AH0 187 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 KCTD9Q7L273 389 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 Q8N1Y9 231 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 TTC9CQ8N5M4 171 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 ADAD2Q8NCV1 583 aaKnown RBP5.41□□□□□ -1.54
VPS41-208ENST00000448833 OR4S2Q8NH73 311 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 NRG4Q8WWG1 115 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 SRSF12Q8WXF0 261 aaKnown RBP5.41□□□□□ -1.54
VPS41-208ENST00000448833 BORCS5Q969J3 196 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 CYYR1Q96J86 154 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 CNBD2Q96M20 576 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 ST6GALNAC5Q9BVH7 336 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 YTHDF1Q9BYJ9 559 aaKnown RBP5.41□□□□□ -1.54
VPS41-208ENST00000448833 OR51E2Q9H255 320 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 SLC2A8Q9NY64 477 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 TECRQ9NZ01 308 aaKnown RBP5.41□□□□□ -1.54
VPS41-208ENST00000448833 ZNF230Q9UIE0 474 aaPredicted RBP5.41□□□□□ -1.54
VPS41-208ENST00000448833 SSR3Q9UNL2 185 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 ZNF257Q9Y2Q1 563 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 STAB2Q8WWQ8 2551 aa5.41□□□□□ -1.54
VPS41-208ENST00000448833 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.4□□□□□ -1.54
VPS41-208ENST00000448833 A0A0A6YYH2 397 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 TRBV9A0A0B4J1U6 114 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 SHISA3A0PJX4 238 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 A6NJ64 397 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 SRRM4A7MD48 611 aaKnown RBP5.4□□□□□ -1.54
VPS41-208ENST00000448833 FCGR3BO75015 233 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 TPPPO94811 219 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 HIST1H1BP16401 226 aaKnown RBP5.4□□□□□ -1.54
VPS41-208ENST00000448833 GNG2P59768 71 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 SSBP2P81877 361 aaPredicted RBP5.4□□□□□ -1.54
VPS41-208ENST00000448833 RHOGP84095 191 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 FAM106AQ4KMX7 169 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 UBE2UQ5VVX9 321 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 C22orf42Q6IC83 251 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 IZUMO2Q6UXV1 221 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 ZNF66Q6ZN08 573 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 ZBTB34Q8NCN2 500 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 OR4A5Q8NH83 315 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 OR2A7Q96R45 310 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 ZNF430Q9H8G1 570 aaPredicted RBP5.4□□□□□ -1.54
VPS41-208ENST00000448833 THYN1Q9P016 225 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 ANXA10Q9UJ72 324 aa5.4□□□□□ -1.54
VPS41-208ENST00000448833 RYR3Q15413 4870 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 LINC00473A8K010 186 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 ANKRD65E5RJM6 399 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 LGALS9O00182 355 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 GGCTO75223 188 aaKnown RBP5.39□□□□□ -1.55
VPS41-208ENST00000448833 KBTBD11O94819 623 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 CSN3P07498 182 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 FGF2P09038 288 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 LORP23490 312 aaPredicted RBP5.39□□□□□ -1.55
VPS41-208ENST00000448833 CBX5P45973 191 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 OR10A3P58181 314 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 DYRK1AQ13627 763 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 EXOSC2Q13868 293 aaKnown RBP5.39□□□□□ -1.55
VPS41-208ENST00000448833 ANKRD55Q3KP44 614 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms