RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SPINK9Q5DT21 86 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 OR9G1Q8NH87 305 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 NEIL1Q96FI4 390 aaPredicted RBP15.49■□□□□ 0.07
USP39-202ENST00000409025 CLCC1Q96S66 551 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 C19orf84I3L1E1 186 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 RUNX1Q01196 453 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 TAGLNQ01995 201 aaKnown RBP15.49■□□□□ 0.07
USP39-202ENST00000409025 ZNF616Q08AN1 781 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 POU2AF1Q16633 256 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 TUSC1Q2TAM9 212 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 OR8G2PQ6IF36 304 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 OR4A47Q6IF82 309 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 FAM71F2Q6NXP2 309 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 LYPD6BQ8NI32 183 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 TMEM186Q96B77 213 aa15.49■□□□□ 0.07
USP39-202ENST00000409025 NARS2Q96I59 477 aaKnown RBP15.49■□□□□ 0.07
USP39-202ENST00000409025 ABCA4P78363 2273 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 TRAV3A0A0B4J244 114 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 A0A1W2PPR1 153 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 C1QL1O75973 258 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 APOA2P02652 100 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 ZNF429Q86V71 674 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 OR13D1Q8NGV5 346 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 MRPL20Q9BYC9 149 aaKnown RBP15.48■□□□□ 0.07
USP39-202ENST00000409025 RFNGQ9Y644 331 aa15.48■□□□□ 0.07
USP39-202ENST00000409025 TSPAN15O95858 294 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 FHITP49789 147 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 ATP6V1FQ16864 119 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 PDLIM3Q53GG5 364 aaPredicted RBP15.47■□□□□ 0.07
USP39-202ENST00000409025 THNSL2Q86YJ6 484 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 ABHD12Q8N2K0 398 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 C11orf42Q8N5U0 333 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 FAM213BQ8TBF2 198 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 AIFM2Q9BRQ8 373 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 TMEM133Q9H2Q1 129 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 UBTD1Q9HAC8 227 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 C15orf61A6NNL5 157 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 RPP30P78346 268 aaKnown RBP15.47■□□□□ 0.07
USP39-202ENST00000409025 WDR25Q64LD2 544 aaPredicted RBP15.47■□□□□ 0.07
USP39-202ENST00000409025 OR10P1Q8NGE3 313 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 PARD6GQ9BYG4 376 aaPredicted RBP15.47■□□□□ 0.07
USP39-202ENST00000409025 HIPK2Q9H2X6 1198 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 CHODLQ9H9P2 273 aa15.47■□□□□ 0.07
USP39-202ENST00000409025 KALRNO60229 2985 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 NBEAQ8NFP9 2946 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 PPIAL4CA0A0B4J2A2 164 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 SCAF4O95104 1147 aaKnown RBP15.46■□□□□ 0.07
USP39-202ENST00000409025 PPIAL4GP0DN37 164 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 IL3RAP26951 378 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 LRRC75BQ2VPJ9 315 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 AKR1C8PQ5T2L2 129 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 C8orf46Q8TAG6 207 aa15.46■□□□□ 0.07
USP39-202ENST00000409025 PINX1Q96BK5 328 aaKnown RBP15.46■□□□□ 0.07
USP39-202ENST00000409025 FOXA2Q9Y261 457 aaPredicted RBP15.46■□□□□ 0.07
USP39-202ENST00000409025 RELNP78509 3460 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 PMS2P5A8MQ11 134 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 IGKV1-16P04430 117 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 OR8U8P0C7N1 319 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 IGFBP2P18065 325 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 AKR1C1Q04828 323 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 COMMD1Q8N668 190 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 OR5AN1Q8NGI8 311 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 TREM1Q9NP99 234 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 SMG1Q96Q15 3661 aaKnown RBP15.45■□□□□ 0.06
USP39-202ENST00000409025 ACACBO00763 2458 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 H0YJW9 148 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 H7C2Y5 167 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 AGPAT2O15120 278 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 RBP4P02753 201 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 REG1BP48304 166 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 ZNF137PP52743 207 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 SRSF3P84103 164 aaKnown RBP15.45■□□□□ 0.06
USP39-202ENST00000409025 OSR1Q8TAX0 266 aaPredicted RBP15.45■□□□□ 0.06
USP39-202ENST00000409025 TNFRSF14Q92956 283 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 ST6GALNAC6Q969X2 333 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 TMEM147Q9BVK8 224 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 WDR61Q9GZS3 305 aaKnown RBP15.45■□□□□ 0.06
USP39-202ENST00000409025 HEYLQ9NQ87 328 aaPredicted RBP15.45■□□□□ 0.06
USP39-202ENST00000409025 TCF19Q9Y242 345 aa15.45■□□□□ 0.06
USP39-202ENST00000409025 DOCK11Q5JSL3 2073 aa15.44■□□□□ 0.06
USP39-202ENST00000409025 TMEM218A2RU14 115 aa15.44■□□□□ 0.06
USP39-202ENST00000409025 GNB2P62879 340 aa15.44■□□□□ 0.06
USP39-202ENST00000409025 PSMG3Q9BT73 122 aaPredicted RBP15.44■□□□□ 0.06
USP39-202ENST00000409025 TMEM14BQ9NUH8 114 aa15.44■□□□□ 0.06
USP39-202ENST00000409025 PRNDQ9UKY0 176 aa15.44■□□□□ 0.06
USP39-202ENST00000409025 FBXO7Q9Y3I1 522 aa15.44■□□□□ 0.06
USP39-202ENST00000409025 UBE2L5PA0A1B0GUS4 154 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 hCG_1809904A0A1W2PP81 198 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 A0A1W2PPE2 198 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 A0A1W2PR64 198 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 A0A1W2PRV1 198 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 A6NNC1 897 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 C15orf62A8K5M9 175 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 ARG1P05089 322 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 CDKN1AP38936 164 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 VDAC2P45880 294 aaPredicted RBP15.43■□□□□ 0.06
USP39-202ENST00000409025 HOXA1P49639 335 aaPredicted RBP15.43■□□□□ 0.06
USP39-202ENST00000409025 PRRX1P54821 245 aa15.43■□□□□ 0.06
USP39-202ENST00000409025 HSPE1P61604 102 aaKnown RBP15.43■□□□□ 0.06
USP39-202ENST00000409025 DPPA3Q6W0C5 159 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms