RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 UBE2L5PA0A1B0GUS4 154 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 LINC00473A8K010 186 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 RAB29O14966 203 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 SPRY3O43610 288 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 MT-ND4LP03901 98 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 OR4A8P0C604 315 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 FOLR2P14207 255 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 GPR12P47775 334 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 ADIPOQQ15848 244 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 ISOC2Q96AB3 205 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 AGMATQ9BSE5 352 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 PARD6GQ9BYG4 376 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-202ENST00000374876 EGLN1Q9GZT9 426 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 BIN3Q9NQY0 253 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 CLN8Q9UBY8 286 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 NDUFA2O43678 99 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 RAB5BP61020 215 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 ZFP82Q8N141 532 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 C2CD4CQ8TF44 421 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 VSIRQ9H7M9 311 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 GNG13Q9P2W3 67 aa12.83□□□□□ -0.36
CCDC40-202ENST00000374876 LINC00205P59089 165 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 KHDC3LQ587J8 217 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 SPRNQ5BIV9 151 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 CYB561D1Q8N8Q1 229 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 DTD1Q8TEA8 209 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 TAF15Q92804 592 aaKnown RBP eCLIP12.82□□□□□ -0.36
CCDC40-202ENST00000374876 PINX1Q96BK5 328 aaKnown RBP12.82□□□□□ -0.36
CCDC40-202ENST00000374876 CIB3Q96Q77 187 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-202ENST00000374876 SEBOXQ9HB31 216 aaPredicted RBP12.82□□□□□ -0.36
CCDC40-202ENST00000374876 JPT1Q9UK76 154 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 USF3Q68DE3 2245 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 NAV2Q8IVL1 2488 aa12.82□□□□□ -0.36
CCDC40-202ENST00000374876 A0A1W2PPH5 198 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 MARCH11A6NNE9 402 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 H3BQ15 152 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 CDKN1AP38936 164 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 EDDM3BP56851 147 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 SELENOVP59797 346 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 RPS23P62266 143 aaKnown RBP12.81□□□□□ -0.36
CCDC40-202ENST00000374876 RNF212Q495C1 297 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 TMEM41BQ5BJD5 291 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 LCN15Q6UWW0 184 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 ZNRF1Q8ND25 227 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 ITLN1Q8WWA0 313 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 LOC102723971A0A1B0GUV8 181 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 C1orf196B1AJZ1 125 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 ARG1P05089 322 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 FBP1P09467 338 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 ELLP55199 621 aaPredicted RBP12.81□□□□□ -0.36
CCDC40-202ENST00000374876 ATP6V1FQ16864 119 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 MORN2Q502X0 79 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 ZNF429Q86V71 674 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 MBD3L1Q8WWY6 194 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 IGFBPL1Q8WX77 278 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 MRPL37Q9BZE1 423 aaKnown RBP12.81□□□□□ -0.36
CCDC40-202ENST00000374876 CBLN4Q9NTU7 201 aa12.81□□□□□ -0.36
CCDC40-202ENST00000374876 CHD3Q12873 2000 aaKnown RBP12.8□□□□□ -0.36
CCDC40-202ENST00000374876 IGLV3-9A0A075B6K5 115 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 A0A1W2PPE2 198 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 ZFP92A6NM28 416 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 CEBPZOSA8MTT3 80 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 LHBP01229 141 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 DUTP33316 252 aaKnown RBP12.8□□□□□ -0.36
CCDC40-202ENST00000374876 ZNF726P1Q15940 193 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 CR1LQ2VPA4 569 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 NCR3LG1Q68D85 454 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 DTX2Q86UW9 622 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 FAM216AQ8WUB2 273 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 ZDHHC16Q969W1 377 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 R3HDM4Q96D70 268 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 RCC1LQ96I51 464 aaKnown RBP12.8□□□□□ -0.36
CCDC40-202ENST00000374876 TMEM147Q9BVK8 224 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 TIMM9Q9Y5J7 89 aa12.8□□□□□ -0.36
CCDC40-202ENST00000374876 VSTM5A8MXK1 200 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 YPEL1O60688 119 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 AKR1D1P51857 326 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 HABP2Q14520 560 aaPredicted RBP12.79□□□□□ -0.36
CCDC40-202ENST00000374876 C11orf71Q6IPW1 123 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 FAM24BQ8N5W8 94 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 OR10P1Q8NGE3 313 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 RAB39BQ96DA2 213 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 YPEL2Q96QA6 119 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 NIPSNAP3BQ9BS92 247 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 OR6C3Q9NZP0 311 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 CCDC168Q8NDH2 2452 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 FCGR3BO75015 233 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 OR2C1O95371 312 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 CD55P08174 381 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 BCL2P10415 239 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 FGF8P55075 233 aaPredicted RBP12.79□□□□□ -0.36
CCDC40-202ENST00000374876 DEFB113Q30KQ7 82 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 ZCCHC24Q8N2G6 241 aaKnown RBP12.79□□□□□ -0.36
CCDC40-202ENST00000374876 ZNF665Q9H7R5 613 aa12.79□□□□□ -0.36
CCDC40-202ENST00000374876 TEX15Q9BXT5 2789 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 VPS13CQ709C8 3753 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 B9A039 149 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 M0R1X1 148 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 OVOL3O00110 214 aa12.78□□□□□ -0.36
CCDC40-202ENST00000374876 F2RL2O00254 374 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms