RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CASP6P55212 293 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 IMMP2LQ96T52 175 aa13.64□□□□□ -0.23
SDC4-201ENST00000372733 ZNF705FA8MVS1 300 aaPredicted RBP13.63□□□□□ -0.23
SDC4-201ENST00000372733 RRHO14718 337 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 ZNF705DP0CH99 300 aaPredicted RBP13.63□□□□□ -0.23
SDC4-201ENST00000372733 ZNF705BP0CI00 300 aaPredicted RBP13.63□□□□□ -0.23
SDC4-201ENST00000372733 FOXL1Q12952 345 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 MIC13Q5XKP0 118 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 DEFB127Q9H1M4 99 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 FOXJ2Q9P0K8 574 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 SOX15O60248 233 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 SOX8P57073 446 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 PRAMEF6Q5VXH4 476 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 RAB1CQ92928 201 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 TBX15Q96SF7 602 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 FAM234AQ9H0X4 552 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 ABI3Q9P2A4 366 aa13.63□□□□□ -0.23
SDC4-201ENST00000372733 IQCF6A8MYZ5 107 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 KITLGP21583 273 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 CBLN1P23435 193 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 GABRA6Q16445 453 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 TREML4Q6UXN2 200 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 C11orf53Q8IXP5 236 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 NBEAQ8NFP9 2946 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 CMTM2Q8TAZ6 248 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 MGST2Q99735 147 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 ZDHHC11Q9H8X9 412 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 MED13Q9UHV7 2174 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 COL27A1Q8IZC6 1860 aaPredicted RBP13.62□□□□□ -0.23
SDC4-201ENST00000372733 C9orf172C9J069 976 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 M0R143 59 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 AQP7O14520 342 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 LYZL6O75951 148 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 FOXF2Q12947 444 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 MRPL49Q13405 166 aaKnown RBP13.62□□□□□ -0.23
SDC4-201ENST00000372733 TRIP6Q15654 476 aaKnown RBP13.62□□□□□ -0.23
SDC4-201ENST00000372733 VKORC1L1Q8N0U8 176 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 Q8TCH9 128 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 HSD17B10Q99714 261 aaKnown RBP13.62□□□□□ -0.23
SDC4-201ENST00000372733 MS4A5Q9H3V2 200 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 TP53TG3Q9ULZ0 132 aa13.62□□□□□ -0.23
SDC4-201ENST00000372733 FCGR3BO75015 233 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 OR10J1P30954 320 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 TIMP3P35625 211 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 RPL29P47914 159 aaKnown RBP13.61□□□□□ -0.23
SDC4-201ENST00000372733 LPAL2Q16609 132 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 DCAF10Q5QP82 559 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 PRAMEF5Q5TYX0 476 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 GGTLC1Q9BX51 225 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 YTHDF2Q9Y5A9 579 aaKnown RBP13.61□□□□□ -0.23
SDC4-201ENST00000372733 TMEM210A6NLX4 147 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 LINC00310P59036 64 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 UBE2NP61088 152 aaKnown RBP13.61□□□□□ -0.23
SDC4-201ENST00000372733 TMEM249Q2WGJ8 235 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 ACP7Q6ZNF0 438 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 Q6ZWC4 215 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 TCTEX1D1Q8N7M0 179 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 OCC1Q8TAD7 63 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 KLF14Q8TD94 323 aaPredicted RBP13.61□□□□□ -0.23
SDC4-201ENST00000372733 ZCCHC14Q8WYQ9 949 aaKnown RBP13.61□□□□□ -0.23
SDC4-201ENST00000372733 BTF3L4Q96K17 158 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 SPRR3Q9UBC9 169 aa13.61□□□□□ -0.23
SDC4-201ENST00000372733 J3QW42 95 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 TDGF1P3P51864 188 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 EDDM3AQ14507 147 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 HLA-DRB5Q30154 266 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 PDLIM3Q53GG5 364 aaPredicted RBP13.6□□□□□ -0.23
SDC4-201ENST00000372733 TOMM20LQ6UXN7 152 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 OR10G8Q8NGN5 311 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 SSMEM1Q8WWF3 244 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 HEYLQ9NQ87 328 aaPredicted RBP13.6□□□□□ -0.23
SDC4-201ENST00000372733 FZR1Q9UM11 496 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 SLC17A3O00476 420 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 PROP1O75360 226 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 STAG3L2P0CL84 134 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 STAG3L3P0CL85 134 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 TDGF1P13385 188 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 RAB4AP20338 218 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 OPRK1P41145 380 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 PEAR1Q5VY43 1037 aaPredicted RBP13.6□□□□□ -0.23
SDC4-201ENST00000372733 SP1P08047 785 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 IGHV1-2P23083 117 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 YPEL3P61236 119 aaPredicted RBP13.6□□□□□ -0.23
SDC4-201ENST00000372733 TDRG1Q3Y452 100 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 SPATA31B1PQ5VZV4 182 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 GCNT2Q8N0V5 402 aa13.6□□□□□ -0.23
SDC4-201ENST00000372733 PTPRBP23467 1997 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 TRAV3A0A0B4J244 114 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 K7EN84 100 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 WISP2O76076 250 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 IGHV3-13P01766 116 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 IGHV3-7P01780 117 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 DUTP33316 252 aaKnown RBP13.59□□□□□ -0.23
SDC4-201ENST00000372733 WDR82Q6UXN9 313 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 ZNF705AQ6ZN79 300 aaPredicted RBP13.59□□□□□ -0.23
SDC4-201ENST00000372733 SPRY4Q9C004 299 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 SERF1AO75920 110 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 CXorf1O96002 111 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 FRMD6-AS1P0C7T7 363 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 GPR12P47775 334 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms