RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 WASHC3Q9Y3C0 194 aa15.03■□□□□ -0
CLN3-206ENST00000360019 CR1P17927 2039 aa15.02■□□□□ -0
CLN3-206ENST00000360019 SRRM4A7MD48 611 aaKnown RBP15.02■□□□□ -0
CLN3-206ENST00000360019 OR9G9P0C7N8 305 aa15.02■□□□□ -0
CLN3-206ENST00000360019 RRASP10301 218 aa15.02■□□□□ -0
CLN3-206ENST00000360019 LYL1P12980 280 aa15.02■□□□□ -0
CLN3-206ENST00000360019 LGALSLQ3ZCW2 172 aaPredicted RBP15.02■□□□□ -0
CLN3-206ENST00000360019 TMEM65Q6PI78 240 aa15.02■□□□□ -0
CLN3-206ENST00000360019 LINC01356Q8N9X3 169 aa15.02■□□□□ -0
CLN3-206ENST00000360019 RHOVQ96L33 236 aa15.02■□□□□ -0
CLN3-206ENST00000360019 COA4Q9NYJ1 87 aa15.02■□□□□ -0
CLN3-206ENST00000360019 RCL1Q9Y2P8 373 aaKnown RBP15.02■□□□□ -0
CLN3-206ENST00000360019 HSPB11Q9Y547 144 aa15.02■□□□□ -0
CLN3-206ENST00000360019 HILPDAQ9Y5L2 63 aa15.02■□□□□ -0
CLN3-206ENST00000360019 POMT1Q9Y6A1 747 aa15.02■□□□□ -0
CLN3-206ENST00000360019 ST8SIA3O43173 380 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 KCNAB3O43448 404 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 DEDDO75618 318 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 PET100P0DJ07 73 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 CXCL2P19875 107 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 PAX6P26367 422 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 MC5RP33032 325 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 CEACAM3P40198 252 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 ERVK-16P61578 105 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 ID3Q02535 119 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 POU2AF1Q16633 256 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 TMEM177Q53S58 311 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 MOB3BQ86TA1 216 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 ZNF546Q86UE3 836 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 C17orf50Q8WW18 174 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 TMEM140Q9NV12 185 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 TNFSF18Q9UNG2 199 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 TRAV20A0A0B4J274 112 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 CENPVL3A0A0U1RRI6 287 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 RAB13P51153 203 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 POLR2GP62487 172 aaKnown RBP eCLIP15.01□□□□□ -0.01
CLN3-206ENST00000360019 MINOS1Q5TGZ0 78 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 DYNAPQ8N1N2 210 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 WFDC11Q8NEX6 87 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 OSR1Q8TAX0 266 aaPredicted RBP15.01□□□□□ -0.01
CLN3-206ENST00000360019 DCUN1D4Q92564 292 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 FLYWCH2Q96CP2 140 aaKnown RBP15.01□□□□□ -0.01
CLN3-206ENST00000360019 MAGT1Q9H0U3 335 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 NSG2Q9Y328 171 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 AUP1Q9Y679 476 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 MINOS1-NBL1R4GNA1 71 aa15.01□□□□□ -0.01
CLN3-206ENST00000360019 SHOXO15266 292 aa15□□□□□ -0.01
CLN3-206ENST00000360019 HRASP01112 189 aa15□□□□□ -0.01
CLN3-206ENST00000360019 OR4A47Q6IF82 309 aa15□□□□□ -0.01
CLN3-206ENST00000360019 OR4C13Q8NGP0 309 aa15□□□□□ -0.01
CLN3-206ENST00000360019 AJUBAQ96IF1 538 aa15□□□□□ -0.01
CLN3-206ENST00000360019 RITA1Q96K30 269 aa15□□□□□ -0.01
CLN3-206ENST00000360019 HARBI1Q96MB7 349 aa15□□□□□ -0.01
CLN3-206ENST00000360019 ZFP57Q9NU63 452 aa15□□□□□ -0.01
CLN3-206ENST00000360019 TRAV3A0A0B4J244 114 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 RNF222A6NCQ9 220 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 TIMM23O14925 209 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 IGHV4-31P0DP07 118 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 LGALS4P56470 323 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 SSX2Q16385 188 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 TMEM249Q2WGJ8 235 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 PIP4P2Q8N4L2 257 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 C7orf69Q9H7B7 122 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 TBL2Q9Y4P3 447 aaKnown RBP14.99□□□□□ -0.01
CLN3-206ENST00000360019 FAM90A9PA6NNJ1 464 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 RLN2P04090 185 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 GATA3P23771 443 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 SAA4P35542 130 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 OR8H3Q8N146 312 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 CFHR4Q92496 578 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 C11orf1Q9H5F2 150 aa14.99□□□□□ -0.01
CLN3-206ENST00000360019 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.99□□□□□ -0.01
CLN3-206ENST00000360019 TRAV40A0A0B4J280 105 aa14.98□□□□□ -0.01
CLN3-206ENST00000360019 SSSCA1O60232 199 aa14.98□□□□□ -0.01
CLN3-206ENST00000360019 IL6RP08887 468 aaPredicted RBP14.98□□□□□ -0.01
CLN3-206ENST00000360019 SAA1P0DJI8 122 aaPredicted RBP14.98□□□□□ -0.01
CLN3-206ENST00000360019 OR2B8PP59922 312 aa14.98□□□□□ -0.01
CLN3-206ENST00000360019 RELBQ01201 579 aa14.98□□□□□ -0.01
CLN3-206ENST00000360019 HABP2Q14520 560 aaPredicted RBP14.98□□□□□ -0.01
CLN3-206ENST00000360019 FOXC2Q99958 501 aa14.98□□□□□ -0.01
CLN3-206ENST00000360019 MS4A7Q9GZW8 240 aaPredicted RBP14.98□□□□□ -0.01
CLN3-206ENST00000360019 MFFQ9GZY8 342 aa14.98□□□□□ -0.01
CLN3-206ENST00000360019 ANK3Q12955 4377 aaKnown RBP14.97□□□□□ -0.01
CLN3-206ENST00000360019 IGHV3OR16-10A0A075B7F0 116 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 MSGN1A6NI15 193 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 NPFFO15130 113 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 AVPP01185 164 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 IGLV2-23P01705 113 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 ARHGDIBP52566 201 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 RPS16P62249 146 aaKnown RBP14.97□□□□□ -0.01
CLN3-206ENST00000360019 AARDQ4LEZ3 155 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 QTRT1Q9BXR0 403 aaKnown RBP14.97□□□□□ -0.01
CLN3-206ENST00000360019 HSPB7Q9UBY9 170 aa14.97□□□□□ -0.01
CLN3-206ENST00000360019 OOSP1A8MZH6 123 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 FAM90A26D6RGX4 464 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 E5RGE8 158 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 L7N2F9 121 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 RBMXL2O75526 392 aaKnown RBP14.96□□□□□ -0.01
CLN3-206ENST00000360019 TMEM50AO95807 157 aa14.96□□□□□ -0.01
CLN3-206ENST00000360019 TGFAP01135 160 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms