RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DOLPP1Q86YN1 238 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 Q8WTZ3 238 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 TMPRSS5Q9H3S3 457 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 TRAV3A0A0B4J244 114 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 MKRN2OSH3BPM6 223 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 NQO2P16083 231 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 ERVK-16P61578 105 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 RELBQ01201 579 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 ZNF709Q8N972 641 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 OR52E5Q8NH55 327 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 GAFA1Q96PS6 74 aa17.19■□□□□ 0.34
CCDC88B-203ENST00000359902 A0A0G2JNJ9 132 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 LY86O95711 162 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 KIR2DS2P43631 304 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 CD81P60033 236 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 ERVFRD-1P60508 538 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 PNRC1Q12796 327 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 PDLIM3Q53GG5 364 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 SDF2L1Q9HCN8 221 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 RAB9BQ9NP90 201 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 Q9UFV3 132 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 RP1L1Q8IWN7 2480 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 IGHV2-5P01817 119 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 CXCL1P09341 107 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 TCF23Q7RTU1 214 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 TGIF2LYQ8IUE0 185 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 Q8N7P7 452 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 NUP37Q8NFH4 326 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 ABHD17AQ96GS6 310 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 CCL13Q99616 98 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 ACTR3CQ9C0K3 210 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 URGCP-MRPS24S4R325 110 aa17.18■□□□□ 0.34
CCDC88B-203ENST00000359902 PLCE1Q9P212 2302 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 DSCAML1Q8TD84 2053 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 TRGV10A0A0A0MS01 117 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 S100A9P06702 114 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 SMIM6P0DI80 62 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 TNFSF4P23510 183 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 VDAC2P45880 294 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 RPS10P46783 165 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 TLE1Q04724 770 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 TMEM140Q9NV12 185 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 WDR83OSQ9Y284 106 aa17.17■□□□□ 0.34
CCDC88B-203ENST00000359902 CD1BP29016 333 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 MEF2BQ02080 365 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 WDR25Q64LD2 544 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 RAB24Q969Q5 203 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 ZNF251Q9BRH9 671 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 METTL1Q9UBP6 276 aaKnown RBP17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 SAA2-SAA4A0A096LPE2 208 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 C17orf112F2Z3M2 114 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 IFNA10P01566 189 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 GYPAP02724 150 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 S100A8P05109 93 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 SAA2P0DJI9 122 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 TDGF1P3P51864 188 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 ZNF788Q6ZQV5 615 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 ZNF436-AS1Q8NC38 126 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 OR4S2Q8NH73 311 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 HEYLQ9NQ87 328 aaPredicted RBP17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 DCAF16Q9NXF7 216 aa17.16■□□□□ 0.34
CCDC88B-203ENST00000359902 RPP30P78346 268 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 FABP9Q0Z7S8 132 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 TMEM108Q6UXF1 575 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 FAM216BQ8N7L0 139 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 C16orf97H3BN30 126 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 PRRG2O14669 202 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 RRHO14718 337 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 PSMB3P49720 205 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 ZNF439Q8NDP4 499 aa17.15■□□□□ 0.34
CCDC88B-203ENST00000359902 TGIF2-C20orf24A0A0A6YYL0 155 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 GFRA3O60609 400 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 CISD2Q8N5K1 135 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 NANPQ8TBE9 248 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 GATAD1Q8WUU5 269 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 LINC00574Q9H8X3 128 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 TMEM242Q9NWH2 141 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 TP53TG5Q9Y2B4 290 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 CEP250Q9BV73 2442 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 RAI1Q7Z5J4 1906 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 CYB5BO43169 146 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 FABP1P07148 127 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 DEFA4P12838 97 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 MRPS11P82912 194 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 TEX36Q5VZQ5 186 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 DIRC2Q96SL1 478 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 IDI2-AS1Q9NZ38 188 aa17.14■□□□□ 0.33
CCDC88B-203ENST00000359902 DPRXA6NFQ7 191 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 PRSS46E5RG02 174 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 ACOT6Q3I5F7 207 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 LYG1Q8N1E2 194 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 ABHD12Q8N2K0 398 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 ZNF383Q8NA42 475 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 TMEM170AQ8WVE7 144 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 CORO2AQ92828 525 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 ELOVL5Q9NYP7 299 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 TCF19Q9Y242 345 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 TANC2Q9HCD6 1990 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 TET2Q6N021 2002 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 DYSFO75923 2080 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms