RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 PDLIM3Q53GG5 364 aaPredicted RBP13.74□□□□□ -0.21
SAMM50-201ENST00000350028 C1orf229Q6ZS94 237 aaPredicted RBP13.74□□□□□ -0.21
SAMM50-201ENST00000350028 SLC25A48Q6ZT89 311 aaKnown RBP13.74□□□□□ -0.21
SAMM50-201ENST00000350028 MBD3L1Q8WWY6 194 aa13.74□□□□□ -0.21
SAMM50-201ENST00000350028 RPRMQ9NS64 109 aa13.74□□□□□ -0.21
SAMM50-201ENST00000350028 UBE2L5PA0A1B0GUS4 154 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 CCL21O00585 134 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 DAOP14920 347 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 RELBQ01201 579 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 TMEM41BQ5BJD5 291 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 SSX9Q7RTT3 188 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 CCL17Q92583 94 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 SMG1Q96Q15 3661 aaKnown RBP13.73□□□□□ -0.21
SAMM50-201ENST00000350028 ICE1Q9Y2F5 2266 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 DIDO1Q9BTC0 2240 aaKnown RBP13.73□□□□□ -0.21
SAMM50-201ENST00000350028 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.73□□□□□ -0.21
SAMM50-201ENST00000350028 NDUFB3O43676 98 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 MMP23AO75900 390 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 OR2B8PP59922 312 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 RPL31P62899 125 aaKnown RBP13.73□□□□□ -0.21
SAMM50-201ENST00000350028 VWC2Q2TAL6 325 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 ZNF506Q5JVG8 444 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 TMEM88Q6PEY1 159 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 NEUROG1Q92886 237 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 RARRES2Q99969 163 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 UNKLQ9H9P5 680 aaKnown RBP13.73□□□□□ -0.21
SAMM50-201ENST00000350028 TMEM140Q9NV12 185 aa13.73□□□□□ -0.21
SAMM50-201ENST00000350028 KALRNO60229 2985 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 FAM90A27PA6NNH2 459 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 GNG10P50151 68 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 LRRC10Q5BKY1 277 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 ZNF429Q86V71 674 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 CBLN2Q8IUK8 224 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 ZNF383Q8NA42 475 aa13.72□□□□□ -0.21
SAMM50-201ENST00000350028 C15orf62A8K5M9 175 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 NDUFA2O43678 99 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 HRASP01112 189 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 POU2AF1Q16633 256 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 SPINK9Q5DT21 86 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 HEPN1Q6WQI6 88 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 ZNF714Q96N38 554 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 VSIRQ9H7M9 311 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 KAAG1Q9UBP8 84 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 HCFC1P51610 2035 aa13.71□□□□□ -0.21
SAMM50-201ENST00000350028 RP1L1Q8IWN7 2480 aaPredicted RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 HSPB1P04792 205 aaKnown RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 ARG1P05089 322 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 SRP19P09132 144 aaKnown RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 VDAC2P45880 294 aaPredicted RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 HAGHQ16775 308 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 KHDC3LQ587J8 217 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 SOHLH1Q5JUK2 328 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 TMEM200BQ69YZ2 307 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 VKORC1L1Q8N0U8 176 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 CLDND2Q8NHS1 167 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 LINC01560Q8TB33 94 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 RAB39BQ96DA2 213 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 MBP02144 154 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 OR13C7P0DN81 318 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 FGF7P21781 194 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 ICAM4Q14773 271 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 ZNF787Q6DD87 383 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 LYPD2Q6UXB3 125 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 RCC1LQ96I51 464 aaKnown RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 RHOVQ96L33 236 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 HEYLQ9NQ87 328 aaPredicted RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 SMCO4Q9NRQ5 59 aa13.7□□□□□ -0.22
SAMM50-201ENST00000350028 CISD1Q9NZ45 108 aaKnown RBP13.7□□□□□ -0.22
SAMM50-201ENST00000350028 TRAV3A0A0B4J244 114 aa13.69□□□□□ -0.22
SAMM50-201ENST00000350028 IGHV1-69-2A0A0G2JMI3 117 aa13.69□□□□□ -0.22
SAMM50-201ENST00000350028 C15orf61A6NNL5 157 aa13.69□□□□□ -0.22
SAMM50-201ENST00000350028 MDKP21741 143 aaPredicted RBP13.69□□□□□ -0.22
SAMM50-201ENST00000350028 ZNF726P1Q15940 193 aa13.69□□□□□ -0.22
SAMM50-201ENST00000350028 AIFM2Q9BRQ8 373 aa13.69□□□□□ -0.22
SAMM50-201ENST00000350028 TCF19Q9Y242 345 aa13.69□□□□□ -0.22
SAMM50-201ENST00000350028 FOXA2Q9Y261 457 aaPredicted RBP13.69□□□□□ -0.22
SAMM50-201ENST00000350028 LOC102723971A0A1B0GUV8 181 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 C17orf112F2Z3M2 114 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 FCN3O75636 299 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 IFNA10P01566 189 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 CT45A6P0DMU7 189 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 CT45A5P0DMU8 189 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 CT45A7P0DMV0 189 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 ELLP55199 621 aaPredicted RBP13.68□□□□□ -0.22
SAMM50-201ENST00000350028 RTL8BQ17RB0 113 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 OR4A47Q6IF82 309 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 LCN15Q6UWW0 184 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 ZNF833PQ6ZTB9 187 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 ZNF709Q8N972 641 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 H1FXQ92522 213 aaKnown RBP13.68□□□□□ -0.22
SAMM50-201ENST00000350028 GGACTQ9BVM4 153 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 SLC35D1Q9NTN3 355 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 IGSF10Q6WRI0 2623 aa13.68□□□□□ -0.22
SAMM50-201ENST00000350028 DVL1O14640 695 aa13.67□□□□□ -0.22
SAMM50-201ENST00000350028 PLAUP00749 431 aa13.67□□□□□ -0.22
SAMM50-201ENST00000350028 CCL3L1P16619 93 aa13.67□□□□□ -0.22
SAMM50-201ENST00000350028 HSPE1P61604 102 aaKnown RBP13.67□□□□□ -0.22
SAMM50-201ENST00000350028 PMS2P11Q13670 270 aa13.67□□□□□ -0.22
SAMM50-201ENST00000350028 AWAT1Q58HT5 328 aa13.67□□□□□ -0.22
SAMM50-201ENST00000350028 C8orf31Q8N9H6 132 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms