RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 CTAGE5O15320 804 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 ZSCAN20P17040 1043 aaPredicted RBP17.36■□□□□ 0.37
CLN3-253ENST00000636977 STK38Q15208 465 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 FBXL16Q8N461 479 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 SLC4A9Q96Q91 983 aa17.36■□□□□ 0.37
CLN3-253ENST00000636977 KAT6BQ8WYB5 2073 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 NEDD4P46934 1319 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 ZFYP08048 801 aaPredicted RBP17.35■□□□□ 0.37
CLN3-253ENST00000636977 TRIM28Q13263 835 aaKnown RBP17.35■□□□□ 0.37
CLN3-253ENST00000636977 DPCR1Q3MIW9 517 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 RALYLQ86SE5 291 aaKnown RBP17.35■□□□□ 0.37
CLN3-253ENST00000636977 SPEF2Q9C093 1822 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 IDH1O75874 414 aaKnown RBP17.35■□□□□ 0.37
CLN3-253ENST00000636977 SF3A1Q15459 793 aaKnown RBP17.35■□□□□ 0.37
CLN3-253ENST00000636977 ADALQ6DHV7 355 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 NLRP10Q86W26 655 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 LRRC8AQ8IWT6 810 aa17.35■□□□□ 0.37
CLN3-253ENST00000636977 MYO5AQ9Y4I1 1855 aaKnown RBP17.35■□□□□ 0.37
CLN3-253ENST00000636977 CPLX1O14810 134 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 MYSM1Q5VVJ2 828 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 ISM2Q6H9L7 571 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 SARM1Q6SZW1 724 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 CNNM1Q9NRU3 951 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 APPP05067 770 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 MARCKSP29966 332 aaPredicted RBP17.34■□□□□ 0.37
CLN3-253ENST00000636977 PHKA1P46020 1223 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 NAA30Q147X3 362 aaPredicted RBP17.34■□□□□ 0.37
CLN3-253ENST00000636977 ATL3Q6DD88 541 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 GIGYF2Q6Y7W6 1299 aaKnown RBP17.34■□□□□ 0.37
CLN3-253ENST00000636977 PLA2G12BQ9BX93 195 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 ANO10Q9NW15 660 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 MAP3K15Q6ZN16 1313 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 TNNT1P13805 278 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 ADD2P35612 726 aa17.34■□□□□ 0.37
CLN3-253ENST00000636977 CHAF1AQ13111 956 aaPredicted RBP17.34■□□□□ 0.37
CLN3-253ENST00000636977 XIRP1Q702N8 1843 aaKnown RBP17.33■□□□□ 0.37
CLN3-253ENST00000636977 SPTLC2O15270 562 aa17.33■□□□□ 0.37
CLN3-253ENST00000636977 TICAM2Q86XR7 235 aa17.33■□□□□ 0.37
CLN3-253ENST00000636977 PHKBQ93100 1093 aa17.33■□□□□ 0.37
CLN3-253ENST00000636977 MYL10Q9BUA6 226 aa17.33■□□□□ 0.37
CLN3-253ENST00000636977 SLAIN2Q9P270 581 aa17.33■□□□□ 0.37
CLN3-253ENST00000636977 WWC3Q9ULE0 1092 aa17.33■□□□□ 0.37
CLN3-253ENST00000636977 AKAP11Q9UKA4 1901 aa17.33■□□□□ 0.36
CLN3-253ENST00000636977 SOS2Q07890 1332 aaPredicted RBP17.33■□□□□ 0.36
CLN3-253ENST00000636977 WDHD1O75717 1129 aaPredicted RBP17.33■□□□□ 0.36
CLN3-253ENST00000636977 CAVIN2O95810 425 aa17.33■□□□□ 0.36
CLN3-253ENST00000636977 CDC25BP30305 580 aa17.33■□□□□ 0.36
CLN3-253ENST00000636977 KIF23Q02241 960 aaPredicted RBP17.33■□□□□ 0.36
CLN3-253ENST00000636977 B4E1Z4 1266 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 CDC27P30260 824 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 TPD52L1Q16890 204 aaPredicted RBP17.32■□□□□ 0.36
CLN3-253ENST00000636977 VGLL2Q8N8G2 317 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 MRFAP1L1Q96HT8 127 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 MROH7-TTC4A0A0A0MT08 1334 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 ZNF532Q9HCE3 1301 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 IRS4O14654 1257 aaPredicted RBP17.32■□□□□ 0.36
CLN3-253ENST00000636977 CTSWP56202 376 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 LRRFIP1Q32MZ4 808 aaKnown RBP17.32■□□□□ 0.36
CLN3-253ENST00000636977 MTERF4Q7Z6M4 381 aaKnown RBP17.32■□□□□ 0.36
CLN3-253ENST00000636977 TBC1D2BQ9UPU7 963 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 ZBTB1Q9Y2K1 713 aa17.32■□□□□ 0.36
CLN3-253ENST00000636977 AXDND1Q5T1B0 1012 aaPredicted RBP17.31■□□□□ 0.36
CLN3-253ENST00000636977 NBPF11Q86T75 865 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 CEP57L1Q8IYX8 460 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 ZNF592Q92610 1267 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 TRMT112Q9UI30 125 aaKnown RBP17.31■□□□□ 0.36
CLN3-253ENST00000636977 FBXO3Q9UK99 471 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 CCDC94Q9BW85 323 aaPredicted RBP17.31■□□□□ 0.36
CLN3-253ENST00000636977 POLR3EQ9NVU0 708 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 TMEM51Q9NW97 253 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 TRMT1Q9NXH9 659 aaKnown RBP17.31■□□□□ 0.36
CLN3-253ENST00000636977 KIAA1468Q9P260 1216 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 TACC3Q9Y6A5 838 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 A0A1W2PQ27 194 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 A0A1W2PQ64 194 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 A0A1W2PQD8 194 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 CCDC69A6NI79 296 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 STARD3NLO95772 234 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 SKILP12757 684 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 CCDC102BQ68D86 513 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 MICU3Q86XE3 530 aa17.31■□□□□ 0.36
CLN3-253ENST00000636977 IPO4Q8TEX9 1081 aaKnown RBP17.31■□□□□ 0.36
CLN3-253ENST00000636977 ANKRD18BA2A2Z9 1011 aa17.3■□□□□ 0.36
CLN3-253ENST00000636977 DHX16O60231 1041 aaKnown RBP17.3■□□□□ 0.36
CLN3-253ENST00000636977 ZNF202O95125 648 aa17.3■□□□□ 0.36
CLN3-253ENST00000636977 ANO1Q5XXA6 986 aa17.3■□□□□ 0.36
CLN3-253ENST00000636977 CTIFO43310 598 aaKnown RBP17.3■□□□□ 0.36
CLN3-253ENST00000636977 CDK11BP21127 795 aaKnown RBP17.3■□□□□ 0.36
CLN3-253ENST00000636977 CCZ1BP86790 482 aa17.3■□□□□ 0.36
CLN3-253ENST00000636977 CCZ1P86791 482 aaPredicted RBP17.3■□□□□ 0.36
CLN3-253ENST00000636977 UTP14CQ5TAP6 766 aaKnown RBP17.3■□□□□ 0.36
CLN3-253ENST00000636977 SYTL4Q96C24 671 aaPredicted RBP17.3■□□□□ 0.36
CLN3-253ENST00000636977 ALG1Q9BT22 464 aa17.3■□□□□ 0.36
CLN3-253ENST00000636977 PFKFB1P16118 471 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 PDE6AP16499 860 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 SYNE3Q6ZMZ3 975 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 STK11IPQ8N1F8 1099 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 KCNG4Q8TDN1 519 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.29■□□□□ 0.362e-6■■■■■ 40.7
CLN3-253ENST00000636977 ANGEL1Q9UNK9 670 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms