RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SMARCA2P51531 1590 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ERFP50548 548 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 BEND3Q5T5X7 828 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NDUFB9Q9Y6M9 179 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ERCC6Q03468 1493 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ARMC2Q8NEN0 867 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 GUCY1A3Q02108 690 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 KRT32Q14532 448 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 CFTRP13569 1480 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ZNF202O95125 648 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 RFX8Q6ZV50 586 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 FAM184BQ9ULE4 1060 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 RBM8AQ9Y5S9 174 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 SNX14Q9Y5W7 946 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 INSRP06213 1382 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 SRLQ86TD4 932 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 IKBKGQ9Y6K9 419 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ADCY1Q08828 1119 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ANKRD18BA2A2Z9 1011 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 KIAA0753Q2KHM9 967 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ANKRD13CQ8N6S4 541 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 KCNG4Q8TDN1 519 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 SH3GL3Q99963 347 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 TMX4Q9H1E5 349 aaPredicted RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 GSPT1P15170 499 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 PPP1R14CQ8TAE6 165 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 PSMD1Q99460 953 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 SUGCTQ9HAC7 445 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 LUC7LQ9NQ29 371 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 KLC4Q9NSK0 619 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 TDRD9Q8NDG6 1382 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 AQRO60306 1485 aaKnown RBP eCLIP5.66□□□□□ -1.51e-6■■■■■ 28.9
VPS13D-214ENST00000620676 CREB3L3Q68CJ9 461 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 STMN2Q93045 179 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 JAKMIP2Q96AA8 810 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 NSD3Q9BZ95 1437 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 KIF3CO14782 793 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ATICP31939 592 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 CDC5LQ99459 802 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 TACC1O75410 805 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 DDX58O95786 925 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 DEUP1Q05D60 604 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 PPFIA1Q13136 1202 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 VSIG1Q86XK7 387 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 PA2G4Q9UQ80 394 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 MAP7D1Q3KQU3 841 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ANKRD36BQ8N2N9 1353 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 MINDY4BA8MYZ0 360 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 CIB2O75838 187 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 FGFR1OPO95684 399 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 ETF1P62495 437 aaKnown RBP5.66□□□□□ -1.5
VPS13D-214ENST00000620676 GUCY2DQ02846 1103 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 CACNA2D3Q8IZS8 1091 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 WHAMMQ8TF30 809 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 SLC12A7Q9Y666 1083 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 KLF18A0A0U1RQI7 1052 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 SMARCC2Q8TAQ2 1214 aa5.66□□□□□ -1.5
VPS13D-214ENST00000620676 DHX29Q7Z478 1369 aaKnown RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 IFT74Q96LB3 600 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 OSBPL1AQ9BXW6 950 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 NLRP12P59046 1061 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 MFSD4BQ5TF39 518 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 CCDC63Q8NA47 563 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 HDAC6Q9UBN7 1215 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 HDLBPQ00341 1268 aaKnown RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 VPS52Q8N1B4 723 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 POLR2DO15514 142 aaKnown RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 CDKL5O76039 1030 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 YY1AP1Q9H869 796 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 PSMD6Q15008 389 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 CYP26C1Q6V0L0 522 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 OTUD6AQ7L8S5 288 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 SYCP3Q8IZU3 236 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 FAM227BQ96M60 508 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 CLIC6Q96NY7 704 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 WDR24Q96S15 920 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 FRMD4BQ9Y2L6 1034 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 U3KPZ7 1027 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 MYL5Q02045 173 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 NNTQ13423 1086 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 TRMT1LQ7Z2T5 733 aaKnown RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 ACRBPQ8NEB7 543 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 CAND2O75155 1236 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 PDHBP11177 359 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 HDGFL1Q5TGJ6 251 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 CC2D1AQ6P1N0 951 aaPredicted RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 GRAMD1CQ8IYS0 662 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 NEK1Q96PY6 1258 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 BLZF1Q9H2G9 400 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 KCNG1Q9UIX4 513 aa5.65□□□□□ -1.5
VPS13D-214ENST00000620676 LUC7L2Q9Y383 392 aaKnown RBP5.65□□□□□ -1.5
VPS13D-214ENST00000620676 H0Y3Z8 333 aa5.65□□□□□ -1.51
VPS13D-214ENST00000620676 GLRX3O76003 335 aaKnown RBP5.65□□□□□ -1.51
VPS13D-214ENST00000620676 KIF22Q14807 665 aa5.65□□□□□ -1.51
VPS13D-214ENST00000620676 ME3Q16798 604 aa5.65□□□□□ -1.51
VPS13D-214ENST00000620676 RNF217Q8TC41 542 aa5.65□□□□□ -1.51
VPS13D-214ENST00000620676 CCDC42Q96M95 316 aa5.65□□□□□ -1.51
VPS13D-214ENST00000620676 ALG1Q9BT22 464 aa5.65□□□□□ -1.51
VPS13D-214ENST00000620676 PTPDC1A2A3K4 754 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms