RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TMOD2Q9NZR1 351 aa23.77■■□□□ 1.4
UPF1-212ENST00000601689 ASTN2O75129 1339 aaPredicted RBP23.77■■□□□ 1.4
UPF1-212ENST00000601689 PDS5AQ29RF7 1337 aaKnown RBP23.77■■□□□ 1.4
UPF1-212ENST00000601689 SALL1Q9NSC2 1324 aa23.77■■□□□ 1.4
UPF1-212ENST00000601689 CEP350Q5VT06 3117 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 TNNI2P48788 182 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 FMR1Q06787 632 aaKnown RBP eCLIP23.76■■□□□ 1.391e-6■■■□□ 15.9
UPF1-212ENST00000601689 CLASRPQ8N2M8 674 aaKnown RBP23.76■■□□□ 1.39
UPF1-212ENST00000601689 KIF1BPQ96EK5 621 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 CDCA5Q96FF9 252 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 ZBED3Q96IU2 234 aaPredicted RBP23.76■■□□□ 1.39
UPF1-212ENST00000601689 PRMT6Q96LA8 375 aaPredicted RBP23.76■■□□□ 1.39
UPF1-212ENST00000601689 VEZTQ9HBM0 779 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 GBA2Q9HCG7 927 aaPredicted RBP23.76■■□□□ 1.39
UPF1-212ENST00000601689 PPP2R3BQ9Y5P8 575 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 TLL2Q9Y6L7 1015 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 CNTNAP1P78357 1384 aa23.76■■□□□ 1.39
UPF1-212ENST00000601689 RASSF10A6NK89 507 aa23.75■■□□□ 1.39
UPF1-212ENST00000601689 ABCF2Q9UG63 623 aa23.75■■□□□ 1.39
UPF1-212ENST00000601689 COL1A1P02452 1464 aaPredicted RBP23.75■■□□□ 1.39
UPF1-212ENST00000601689 FKBP1BP68106 108 aa23.74■■□□□ 1.39
UPF1-212ENST00000601689 RASGRF1Q13972 1273 aa23.74■■□□□ 1.39
UPF1-212ENST00000601689 HHIPL2Q6UWX4 724 aa23.74■■□□□ 1.39
UPF1-212ENST00000601689 DZIP1Q86YF9 867 aaKnown RBP23.74■■□□□ 1.39
UPF1-212ENST00000601689 HHIPL1Q96JK4 782 aa23.74■■□□□ 1.39
UPF1-212ENST00000601689 CLRN2A0PK11 232 aa23.73■■□□□ 1.39
UPF1-212ENST00000601689 TTLL12Q14166 644 aaPredicted RBP23.73■■□□□ 1.39
UPF1-212ENST00000601689 ERICH6Q7L0X2 663 aa23.73■■□□□ 1.39
UPF1-212ENST00000601689 SAPCD2Q86UD0 394 aa23.73■■□□□ 1.39
UPF1-212ENST00000601689 SPATA5Q8NB90 893 aa23.73■■□□□ 1.39
UPF1-212ENST00000601689 ZDHHC15Q96MV8 337 aa23.73■■□□□ 1.39
UPF1-212ENST00000601689 ARID4AP29374 1257 aaPredicted RBP23.72■■□□□ 1.39
UPF1-212ENST00000601689 SUPT20HL1Q3ZLR7 823 aa23.72■■□□□ 1.39
UPF1-212ENST00000601689 RHPN1Q8TCX5 695 aa23.72■■□□□ 1.39
UPF1-212ENST00000601689 DEFB129Q9H1M3 183 aa23.72■■□□□ 1.39
UPF1-212ENST00000601689 APBB1O00213 710 aa23.71■■□□□ 1.39
UPF1-212ENST00000601689 HUNKP57058 714 aa23.71■■□□□ 1.39
UPF1-212ENST00000601689 AACSQ86V21 672 aa23.71■■□□□ 1.39
UPF1-212ENST00000601689 DBNDD2Q9BQY9 259 aa23.71■■□□□ 1.39
UPF1-212ENST00000601689 TDRD3Q9H7E2 651 aaKnown RBP23.71■■□□□ 1.39
UPF1-212ENST00000601689 IFIT2P09913 472 aaKnown RBP23.7■■□□□ 1.38
UPF1-212ENST00000601689 SPDYE2Q495Y8 402 aa23.7■■□□□ 1.38
UPF1-212ENST00000601689 CCDC8Q9H0W5 538 aaPredicted RBP23.7■■□□□ 1.38
UPF1-212ENST00000601689 ZNF70Q9UC06 446 aaPredicted RBP23.7■■□□□ 1.38
UPF1-212ENST00000601689 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.7■■□□□ 1.38
UPF1-212ENST00000601689 PRDX5P30044 214 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 GSTO1P78417 241 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 GRM1Q13255 1194 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 AAMPQ13685 434 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 GRIK5Q16478 980 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 ARMC9Q7Z3E5 817 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 JMYQ8N9B5 988 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 ZNF512BQ96KM6 892 aaPredicted RBP23.69■■□□□ 1.38
UPF1-212ENST00000601689 HMG20BQ9P0W2 317 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 LRP2BPQ9P2M1 347 aa23.69■■□□□ 1.38
UPF1-212ENST00000601689 SCAF8Q9UPN6 1271 aaKnown RBP23.69■■□□□ 1.38
UPF1-212ENST00000601689 WDR33Q9C0J8 1336 aaKnown RBP23.68■■□□□ 1.38
UPF1-212ENST00000601689 PPP1R12BO60237 982 aaPredicted RBP23.68■■□□□ 1.38
UPF1-212ENST00000601689 IGSF3O75054 1194 aa23.68■■□□□ 1.38
UPF1-212ENST00000601689 LDHCP07864 332 aa23.68■■□□□ 1.38
UPF1-212ENST00000601689 VEGFBP49765 207 aa23.68■■□□□ 1.38
UPF1-212ENST00000601689 SIRT2Q8IXJ6 389 aa23.68■■□□□ 1.38
UPF1-212ENST00000601689 EAF2Q96CJ1 260 aaPredicted RBP23.68■■□□□ 1.38
UPF1-212ENST00000601689 IL1RAPL2Q9NP60 686 aa23.68■■□□□ 1.38
UPF1-212ENST00000601689 PCDHAC2Q9Y5I4 1007 aa23.68■■□□□ 1.38
UPF1-212ENST00000601689 MYH2Q9UKX2 1941 aa23.67■■□□□ 1.38
UPF1-212ENST00000601689 DLK2Q6UY11 383 aa23.67■■□□□ 1.38
UPF1-212ENST00000601689 CCDC102AQ96A19 550 aa23.67■■□□□ 1.38
UPF1-212ENST00000601689 CAPNS2Q96L46 248 aa23.67■■□□□ 1.38
UPF1-212ENST00000601689 BCL11AQ9H165 835 aa23.67■■□□□ 1.38
UPF1-212ENST00000601689 RAI14Q9P0K7 980 aa23.67■■□□□ 1.38
UPF1-212ENST00000601689 ZBTB47Q9UFB7 747 aaPredicted RBP23.67■■□□□ 1.38
UPF1-212ENST00000601689 MCAMP43121 646 aa23.66■■□□□ 1.38
UPF1-212ENST00000601689 RASA3Q14644 834 aa23.66■■□□□ 1.38
UPF1-212ENST00000601689 PRAMEF18Q5VWM3 479 aa23.66■■□□□ 1.38
UPF1-212ENST00000601689 RGMBQ6NW40 437 aa23.66■■□□□ 1.38
UPF1-212ENST00000601689 HOOK2Q96ED9 719 aa23.66■■□□□ 1.38
UPF1-212ENST00000601689 NOL10Q9BSC4 688 aaKnown RBP23.66■■□□□ 1.38
UPF1-212ENST00000601689 LRRCC1Q9C099 1032 aa23.66■■□□□ 1.38
UPF1-212ENST00000601689 DBNLQ9UJU6 430 aaKnown RBP23.66■■□□□ 1.38
UPF1-212ENST00000601689 PAPPA2Q9BXP8 1791 aa23.65■■□□□ 1.38
UPF1-212ENST00000601689 TCP10L2B9ZVM9 353 aa23.65■■□□□ 1.38
UPF1-212ENST00000601689 CYP4F22Q6NT55 531 aa23.65■■□□□ 1.38
UPF1-212ENST00000601689 CRBNQ96SW2 442 aa23.65■■□□□ 1.38
UPF1-212ENST00000601689 BEGAINQ9BUH8 593 aa23.65■■□□□ 1.38
UPF1-212ENST00000601689 ZNF157P51786 506 aaPredicted RBP23.64■■□□□ 1.37
UPF1-212ENST00000601689 MAP2K1Q02750 393 aaPredicted RBP23.64■■□□□ 1.37
UPF1-212ENST00000601689 FKBP1CQ5VVH2 108 aa23.64■■□□□ 1.37
UPF1-212ENST00000601689 APOBEC3HQ6NTF7 200 aaKnown RBP23.64■■□□□ 1.37
UPF1-212ENST00000601689 MAP2K2P36507 400 aa23.63■■□□□ 1.37
UPF1-212ENST00000601689 DIXDC1Q155Q3 683 aa23.63■■□□□ 1.37
UPF1-212ENST00000601689 FAM83AQ86UY5 434 aa23.63■■□□□ 1.37
UPF1-212ENST00000601689 AIDAQ96BJ3 306 aa23.63■■□□□ 1.37
UPF1-212ENST00000601689 DAGLAQ9Y4D2 1042 aa23.63■■□□□ 1.37
UPF1-212ENST00000601689 AK9Q5TCS8 1911 aa23.63■■□□□ 1.37
UPF1-212ENST00000601689 NOGQ13253 232 aa23.62■■□□□ 1.37
UPF1-212ENST00000601689 FAM163AQ96GL9 167 aaPredicted RBP23.62■■□□□ 1.37
UPF1-212ENST00000601689 SNRKQ9NRH2 765 aa23.62■■□□□ 1.37
UPF1-212ENST00000601689 USP40Q9NVE5 1235 aa23.62■■□□□ 1.37
UPF1-212ENST00000601689 IREB2P48200 963 aaKnown RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms