RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 NDUFB9Q9Y6M9 179 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 BIN1O00499 593 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 NECTIN1Q15223 517 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 ZFYVE27Q5T4F4 411 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 IFT172Q9UG01 1749 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 RIOK3O14730 519 aaKnown RBP11.95□□□□□ -0.5
LIG1-220ENST00000601091 JAK2O60674 1132 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 TMEM87AQ8NBN3 555 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 AGLP35573 1532 aa11.95□□□□□ -0.5
LIG1-220ENST00000601091 GUCY2CP25092 1073 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 MYRIPQ8NFW9 859 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 TEX13AQ9BXU3 409 aaPredicted RBP11.94□□□□□ -0.5
LIG1-220ENST00000601091 CBX8Q9HC52 389 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 DACH1Q9UI36 760 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 PYCARDQ9ULZ3 195 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 ANKRD18BA2A2Z9 1011 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 TECPR2O15040 1411 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 SKILP12757 684 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 AP1ARQ63HQ0 302 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 NAPBQ9H115 298 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 COPRSQ9NQ92 184 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 IQSEC3Q9UPP2 1182 aaPredicted RBP11.94□□□□□ -0.5
LIG1-220ENST00000601091 LARGE1O95461 756 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 RAB11FIP4Q86YS3 637 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 STK11IPQ8N1F8 1099 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 NUP133Q8WUM0 1156 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 GTF3C6Q969F1 213 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 TTC14Q96N46 770 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 ANKARQ7Z5J8 1434 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 PRAMEF22A3QJZ6 481 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 EYA2O00167 538 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 TAF5LO75529 589 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 SASH1O94885 1247 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 LRMPQ12912 555 aa11.94□□□□□ -0.5
LIG1-220ENST00000601091 TTF1Q15361 905 aaPredicted RBP11.94□□□□□ -0.5
LIG1-220ENST00000601091 GPTP24298 496 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 CEP135Q66GS9 1140 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 ERCC4Q92889 916 aaPredicted RBP11.93□□□□□ -0.5
LIG1-220ENST00000601091 TLR7Q9NYK1 1049 aaKnown RBP11.93□□□□□ -0.5
LIG1-220ENST00000601091 TRMT112Q9UI30 125 aaKnown RBP11.93□□□□□ -0.5
LIG1-220ENST00000601091 CLTCQ00610 1675 aaKnown RBP11.93□□□□□ -0.5
LIG1-220ENST00000601091 PRC1O43663 620 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 IARSP41252 1262 aaKnown RBP11.93□□□□□ -0.5
LIG1-220ENST00000601091 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.93□□□□□ -0.5
LIG1-220ENST00000601091 NME8Q8N427 588 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 UBAC1Q9BSL1 405 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 CA8P35219 290 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 METAP2P50579 478 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIG1-220ENST00000601091 MAP3K12Q12852 859 aa11.93□□□□□ -0.5
LIG1-220ENST00000601091 A0A1B0GUL7 405 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 SMAPO00193 183 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 NAT1P18440 290 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 FILIP1LQ4L180 1135 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 TEX35Q5T0J7 233 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 LRP2BPQ9P2M1 347 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 SLC12A7Q9Y666 1083 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 SPTLC2O15270 562 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 FAM160A1Q05DH4 1040 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 GPS2Q13227 327 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 NAA16Q6N069 864 aaPredicted RBP11.92□□□□□ -0.5
LIG1-220ENST00000601091 TMC6Q7Z403 805 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 AOPEPQ8N6M6 819 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 GNL3LQ9NVN8 582 aaKnown RBP11.92□□□□□ -0.5
LIG1-220ENST00000601091 JRKLQ9Y4A0 524 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 RPS6KL1Q9Y6S9 549 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 KIF20BQ96Q89 1820 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 ELP1O95163 1332 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 IFIT3O14879 490 aaKnown RBP11.92□□□□□ -0.5
LIG1-220ENST00000601091 NEBLO76041 1014 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 STK10O94804 968 aaKnown RBP11.92□□□□□ -0.5
LIG1-220ENST00000601091 PHKG2P15735 406 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 GYS2P54840 703 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 MICU3Q86XE3 530 aa11.92□□□□□ -0.5
LIG1-220ENST00000601091 CCDC196A0A1B0GTZ2 297 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 GOLGA8AA7E2F4 631 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 CCDC191Q8NCU4 936 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 CNNM3Q8NE01 707 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 SEC62Q99442 399 aaKnown RBP11.91□□□□□ -0.5
LIG1-220ENST00000601091 SLC24A3Q9HC58 644 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 NCOA5Q9HCD5 579 aaKnown RBP11.91□□□□□ -0.5
LIG1-220ENST00000601091 DBNLQ9UJU6 430 aaKnown RBP11.91□□□□□ -0.5
LIG1-220ENST00000601091 ADAMTS13Q76LX8 1427 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 ECM2O94769 699 aaPredicted RBP11.91□□□□□ -0.5
LIG1-220ENST00000601091 ZNF75DP51815 510 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 E2F5Q15329 346 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 ZNF710Q8N1W2 664 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 HAUS7Q99871 368 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 PTPRUQ92729 1446 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 A0A087WWV3 80 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 SYKP43405 635 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 SETDB1Q15047 1291 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 MED4Q9NPJ6 270 aa11.91□□□□□ -0.5
LIG1-220ENST00000601091 PDE6BP35913 854 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 SSRP1Q08945 709 aaKnown RBP11.9□□□□□ -0.5
LIG1-220ENST00000601091 TMEM67Q5HYA8 995 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 SLC9C2Q5TAH2 1124 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 ISM2Q6H9L7 571 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 ZNF589Q86UQ0 364 aaPredicted RBP11.9□□□□□ -0.5
LIG1-220ENST00000601091 AMOTL1Q8IY63 956 aa11.9□□□□□ -0.5
LIG1-220ENST00000601091 ALG1Q9BT22 464 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms