RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 EAF2Q96CJ1 260 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-212ENST00000596163 ZNF512BQ96KM6 892 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-212ENST00000596163 PRMT6Q96LA8 375 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-212ENST00000596163 CRBNQ96SW2 442 aa21.2■□□□□ 0.98
SHKBP1-212ENST00000596163 DBNDD2Q9BQY9 259 aa21.2■□□□□ 0.98
SHKBP1-212ENST00000596163 ZNF408Q9H9D4 720 aa21.2■□□□□ 0.98
SHKBP1-212ENST00000596163 GRIK5Q16478 980 aa21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 AACSQ86V21 672 aa21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 SLF2Q8IX21 1173 aa21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 KLRG1Q96E93 195 aa21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 CCDC8Q9H0W5 538 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 HMG20BQ9P0W2 317 aa21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 ZNF646O15015 1829 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-212ENST00000596163 APBB1O00213 710 aa21.18■□□□□ 0.98
SHKBP1-212ENST00000596163 NF2P35240 595 aa21.18■□□□□ 0.98
SHKBP1-212ENST00000596163 TNFAIP1Q13829 316 aa21.18■□□□□ 0.98
SHKBP1-212ENST00000596163 C2orf69Q8N8R5 385 aa21.18■□□□□ 0.98
SHKBP1-212ENST00000596163 CDCA5Q96FF9 252 aa21.18■□□□□ 0.98
SHKBP1-212ENST00000596163 ABCF2Q9UG63 623 aa21.18■□□□□ 0.98
SHKBP1-212ENST00000596163 DEFB115Q30KQ5 88 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 ERICH6Q7L0X2 663 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 ZDHHC15Q96MV8 337 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 VEZTQ9HBM0 779 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 IL1RAPL2Q9NP60 686 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 DBNLQ9UJU6 430 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 SUPT16HQ9Y5B9 1047 aaKnown RBP21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 PCDHAC2Q9Y5I4 1007 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 PPP2R3BQ9Y5P8 575 aa21.17■□□□□ 0.98
SHKBP1-212ENST00000596163 COL1A1P02452 1464 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 IFIT2P09913 472 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 PRDX5P30044 214 aa21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 SPDYE2Q495Y8 402 aa21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 DZIP1Q86YF9 867 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 DCTPP1Q9H773 170 aa21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 TDRD3Q9H7E2 651 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 GBA2Q9HCG7 927 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 TMOD2Q9NZR1 351 aa21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 ZNF70Q9UC06 446 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 TLL2Q9Y6L7 1015 aa21.16■□□□□ 0.98
SHKBP1-212ENST00000596163 ARAP2Q8WZ64 1704 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 CLRN2A0PK11 232 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 RASSF10A6NK89 507 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 MCAMP43121 646 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 TNNI2P48788 182 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 LRRCC1Q9C099 1032 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 DEFB129Q9H1M3 183 aa21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 MKRN1Q9UHC7 482 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-212ENST00000596163 IGSF3O75054 1194 aa21.14■□□□□ 0.97
SHKBP1-212ENST00000596163 FKBP1BP68106 108 aa21.14■□□□□ 0.97
SHKBP1-212ENST00000596163 GSTO1P78417 241 aa21.14■□□□□ 0.97
SHKBP1-212ENST00000596163 DLK2Q6UY11 383 aa21.14■□□□□ 0.97
SHKBP1-212ENST00000596163 PCDHB15Q9Y5E8 787 aa21.14■□□□□ 0.97
SHKBP1-212ENST00000596163 CNTNAP1P78357 1384 aa21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 LDHCP07864 332 aa21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 ECE1P42892 770 aa21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 APOBEC3HQ6NTF7 200 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 SAPCD2Q86UD0 394 aa21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 HHIPL1Q96JK4 782 aa21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 TLR7Q9NYK1 1049 aaKnown RBP21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 LRP2BPQ9P2M1 347 aa21.13■□□□□ 0.97
SHKBP1-212ENST00000596163 SUPT20HL1Q3ZLR7 823 aa21.12■□□□□ 0.97
SHKBP1-212ENST00000596163 SNRKQ9NRH2 765 aa21.12■□□□□ 0.97
SHKBP1-212ENST00000596163 RAI14Q9P0K7 980 aa21.12■□□□□ 0.97
SHKBP1-212ENST00000596163 SCAF8Q9UPN6 1271 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-212ENST00000596163 HUNKP57058 714 aa21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 DIXDC1Q155Q3 683 aa21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 FKBP1CQ5VVH2 108 aa21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 PI16Q6UXB8 463 aa21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 PAXIP1Q6ZW49 1069 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 FAM163AQ96GL9 167 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 BCL11AQ9H165 835 aa21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 DAGLAQ9Y4D2 1042 aa21.11■□□□□ 0.97
SHKBP1-212ENST00000596163 TTLL12Q14166 644 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-212ENST00000596163 RASA3Q14644 834 aa21.1■□□□□ 0.97
SHKBP1-212ENST00000596163 PRAMEF18Q5VWM3 479 aa21.1■□□□□ 0.97
SHKBP1-212ENST00000596163 TBC1D9Q6ZT07 1266 aa21.1■□□□□ 0.97
SHKBP1-212ENST00000596163 TCP10L2B9ZVM9 353 aa21.09■□□□□ 0.97
SHKBP1-212ENST00000596163 ZAP70P43403 619 aa21.09■□□□□ 0.97
SHKBP1-212ENST00000596163 MECOMQ03112 1051 aa21.09■□□□□ 0.97
SHKBP1-212ENST00000596163 ARMC9Q7Z3E5 817 aa21.09■□□□□ 0.97
SHKBP1-212ENST00000596163 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.09■□□□□ 0.97
SHKBP1-212ENST00000596163 ZBTB47Q9UFB7 747 aaPredicted RBP21.09■□□□□ 0.97
SHKBP1-212ENST00000596163 AOX1Q06278 1338 aa21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 PPP1R12BO60237 982 aaPredicted RBP21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 CYP2E1P05181 493 aaPredicted RBP21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 VEGFBP49765 207 aa21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 FAM83AQ86UY5 434 aa21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 JMYQ8N9B5 988 aa21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 NSUN4Q96CB9 384 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 TRPM7Q96QT4 1865 aa21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 USP40Q9NVE5 1235 aa21.08■□□□□ 0.97
SHKBP1-212ENST00000596163 MYH13Q9UKX3 1938 aa21.08■□□□□ 0.96
SHKBP1-212ENST00000596163 GAKO14976 1311 aa21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 POLR2AP24928 1970 aaKnown RBP21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 MAP4K4O95819 1239 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 HDAC1Q13547 482 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 TTF1Q15361 905 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 CDC42EP5Q6NZY7 148 aa21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 HOOK2Q96ED9 719 aa21.07■□□□□ 0.96
SHKBP1-212ENST00000596163 CAPNS2Q96L46 248 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms