RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 PRAMEF18Q5VWM3 479 aa18.79■□□□□ 0.6
SMG6-220ENST00000576218 ZGPATQ8N5A5 531 aaKnown RBP18.79■□□□□ 0.6
SMG6-220ENST00000576218 ZBED3Q96IU2 234 aaPredicted RBP18.79■□□□□ 0.6
SMG6-220ENST00000576218 PRMT6Q96LA8 375 aaPredicted RBP18.79■□□□□ 0.6
SMG6-220ENST00000576218 TMOD2Q9NZR1 351 aa18.79■□□□□ 0.6
SMG6-220ENST00000576218 LDHBP07195 334 aaKnown RBP18.78■□□□□ 0.6
SMG6-220ENST00000576218 HSPA1AP0DMV8 641 aaKnown RBP18.77■□□□□ 0.6
SMG6-220ENST00000576218 HSPA1BP0DMV9 641 aaKnown RBP18.77■□□□□ 0.6
SMG6-220ENST00000576218 TNNI2P48788 182 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 GRIK5Q16478 980 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 HSP90AB4PQ58FF6 505 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 C20orf194Q5TEA3 1177 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 ERC1Q8IUD2 1116 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 HHIPL1Q96JK4 782 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 BEGAINQ9BUH8 593 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 BCL11AQ9H165 835 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 DEFB129Q9H1M3 183 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 TDRD3Q9H7E2 651 aaKnown RBP18.77■□□□□ 0.6
SMG6-220ENST00000576218 ABCF2Q9UG63 623 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 EXOC6BQ9Y2D4 811 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 PPP2R3BQ9Y5P8 575 aa18.77■□□□□ 0.6
SMG6-220ENST00000576218 COL1A1P02452 1464 aaPredicted RBP18.77■□□□□ 0.59
SMG6-220ENST00000576218 ZNF157P51786 506 aaPredicted RBP18.76■□□□□ 0.59
SMG6-220ENST00000576218 FKBP1BP68106 108 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 HDLBPQ00341 1268 aaKnown RBP18.76■□□□□ 0.59
SMG6-220ENST00000576218 RASGRF1Q13972 1273 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 PRKG1Q13976 671 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 TNNI3KQ59H18 835 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 CCDC158Q5M9N0 1113 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 TTC39AQ5SRH9 613 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 RGMBQ6NW40 437 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 DZIP1Q86YF9 867 aaKnown RBP18.76■□□□□ 0.59
SMG6-220ENST00000576218 RPAP2Q8IXW5 612 aaPredicted RBP18.76■□□□□ 0.59
SMG6-220ENST00000576218 ZNF70Q9UC06 446 aaPredicted RBP18.76■□□□□ 0.59
SMG6-220ENST00000576218 FPGT-TNNI3KV9GXZ4 949 aa18.76■□□□□ 0.59
SMG6-220ENST00000576218 APBB1O00213 710 aa18.75■□□□□ 0.59
SMG6-220ENST00000576218 UQCRFS1P1P0C7P4 283 aa18.75■□□□□ 0.59
SMG6-220ENST00000576218 MAP2K1Q02750 393 aaPredicted RBP18.75■□□□□ 0.59
SMG6-220ENST00000576218 SPDYE2Q495Y8 402 aa18.75■□□□□ 0.59
SMG6-220ENST00000576218 SPTY2D1Q68D10 685 aaPredicted RBP18.75■□□□□ 0.59
SMG6-220ENST00000576218 ARMC9Q7Z3E5 817 aa18.75■□□□□ 0.59
SMG6-220ENST00000576218 NOP58Q9Y2X3 529 aaKnown RBP18.75■□□□□ 0.59
SMG6-220ENST00000576218 ECM29Q5VYK3 1845 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 TCP10L2B9ZVM9 353 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 PRDX5P30044 214 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 SUPT20HL1Q3ZLR7 823 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 GPR108Q9NPR9 543 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 ZBTB40Q9NUA8 1239 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.74■□□□□ 0.59
SMG6-220ENST00000576218 SALL1Q9NSC2 1324 aa18.74■□□□□ 0.59
SMG6-220ENST00000576218 PAPPA2Q9BXP8 1791 aa18.73■□□□□ 0.59
SMG6-220ENST00000576218 AOC2O75106 756 aa18.73■□□□□ 0.59
SMG6-220ENST00000576218 SLF2Q8IX21 1173 aa18.73■□□□□ 0.59
SMG6-220ENST00000576218 CCDC102AQ96A19 550 aa18.73■□□□□ 0.59
SMG6-220ENST00000576218 ZDHHC15Q96MV8 337 aa18.73■□□□□ 0.59
SMG6-220ENST00000576218 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.73■□□□□ 0.59
SMG6-220ENST00000576218 PPP1R12BO60237 982 aaPredicted RBP18.72■□□□□ 0.59
SMG6-220ENST00000576218 RRP1P56182 461 aaKnown RBP18.72■□□□□ 0.59
SMG6-220ENST00000576218 NOGQ13253 232 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 RASA3Q14644 834 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 DIXDC1Q155Q3 683 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 HHIPL2Q6UWX4 724 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 MOB2Q70IA6 237 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 ERICH6Q7L0X2 663 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 SPATA5Q8NB90 893 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 DBNDD2Q9BQY9 259 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 ANGEL1Q9UNK9 670 aaKnown RBP18.72■□□□□ 0.59
SMG6-220ENST00000576218 AOX1Q06278 1338 aa18.72■□□□□ 0.59
SMG6-220ENST00000576218 PDS5AQ29RF7 1337 aaKnown RBP18.72■□□□□ 0.59
SMG6-220ENST00000576218 UBE2Q2LH0YL09 131 aa18.71■□□□□ 0.59
SMG6-220ENST00000576218 ARID4AP29374 1257 aaPredicted RBP18.71■□□□□ 0.59
SMG6-220ENST00000576218 MAP2K2P36507 400 aa18.71■□□□□ 0.59
SMG6-220ENST00000576218 CACNB3P54284 484 aa18.71■□□□□ 0.59
SMG6-220ENST00000576218 AACSQ86V21 672 aa18.71■□□□□ 0.59
SMG6-220ENST00000576218 MRIQ9BWK5 157 aa18.71■□□□□ 0.59
SMG6-220ENST00000576218 CCDC8Q9H0W5 538 aaPredicted RBP18.71■□□□□ 0.59
SMG6-220ENST00000576218 RAI14Q9P0K7 980 aa18.71■□□□□ 0.59
SMG6-220ENST00000576218 HMG20BQ9P0W2 317 aa18.7■□□□□ 0.58
SMG6-220ENST00000576218 LRP2BPQ9P2M1 347 aa18.7■□□□□ 0.58
SMG6-220ENST00000576218 DAGLAQ9Y4D2 1042 aa18.7■□□□□ 0.58
SMG6-220ENST00000576218 PI16Q6UXB8 463 aa18.69■□□□□ 0.58
SMG6-220ENST00000576218 CLASRPQ8N2M8 674 aaKnown RBP18.69■□□□□ 0.58
SMG6-220ENST00000576218 KIF1BPQ96EK5 621 aa18.69■□□□□ 0.58
SMG6-220ENST00000576218 IL1RAPL2Q9NP60 686 aa18.69■□□□□ 0.58
SMG6-220ENST00000576218 MCAMP43121 646 aa18.68■□□□□ 0.58
SMG6-220ENST00000576218 IREB2P48200 963 aaKnown RBP18.68■□□□□ 0.58
SMG6-220ENST00000576218 GSTO1P78417 241 aa18.68■□□□□ 0.58
SMG6-220ENST00000576218 NBPF12Q5TAG4 269 aaPredicted RBP18.68■□□□□ 0.58
SMG6-220ENST00000576218 APOBEC3HQ6NTF7 200 aaKnown RBP18.68■□□□□ 0.58
SMG6-220ENST00000576218 RHPN1Q8TCX5 695 aa18.68■□□□□ 0.58
SMG6-220ENST00000576218 TMEM39BQ9GZU3 492 aa18.68■□□□□ 0.58
SMG6-220ENST00000576218 SNRKQ9NRH2 765 aa18.68■□□□□ 0.58
SMG6-220ENST00000576218 ZBTB22O15209 634 aa18.67■□□□□ 0.58
SMG6-220ENST00000576218 RAB11FIP3O75154 756 aa18.67■□□□□ 0.58
SMG6-220ENST00000576218 SLC10A3P09131 477 aa18.67■□□□□ 0.58
SMG6-220ENST00000576218 IFIT2P09913 472 aaKnown RBP18.67■□□□□ 0.58
SMG6-220ENST00000576218 EAF2Q96CJ1 260 aaPredicted RBP18.67■□□□□ 0.58
SMG6-220ENST00000576218 HOOK2Q96ED9 719 aa18.67■□□□□ 0.58
SMG6-220ENST00000576218 NOL10Q9BSC4 688 aaKnown RBP18.67■□□□□ 0.58
SMG6-220ENST00000576218 USP40Q9NVE5 1235 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms