RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	PSD	A5PKW4	1024 aa	Predicted RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	SASH1	O94885	1247 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	GTF2E1	P29083	439 aa	Predicted RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	TXLNA	P40222	546 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	IRX5	P78411	483 aa	Predicted RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	HDX	Q7Z353	690 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	CEP112	Q8N8E3	955 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	KBTBD3	Q8NAB2	608 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	DRC1	Q96MC2	740 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	FAM107B	Q9H098	131 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	GOLPH3L	Q9H4A5	285 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	JADE2	Q9NQC1	790 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	CPSF1	Q10570	1443 aa	Known RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	ANKRD65	E5RJM6	399 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	RNF113A	O15541	343 aa	Known RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	PFKFB2	O60825	505 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	CCT6A	P40227	531 aa	Known RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	NBPF6	Q5VWK0	638 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	WASF1	Q92558	559 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	NBPF4	Q96M43	638 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	CLIC6	Q96NY7	704 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	MYL10	Q9BUA6	226 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	TTC31	Q49AM3	519 aa	Predicted RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	FKBP15	Q5T1M5	1219 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	KCNH5	Q8NCM2	988 aa		13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	ZNF594	Q96JF6	807 aa	Predicted RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	GPHN	Q9NQX3	736 aa	Predicted RBP	13.03	□□□□□ -0.32
CLN3-238	ENST00000569430	SBNO1	A3KN83	1393 aa		13.02	□□□□□ -0.32
CLN3-238	ENST00000569430	MYO3A	Q8NEV4	1616 aa		13.02	□□□□□ -0.32
CLN3-238	ENST00000569430	SHTN1	A0MZ66	631 aa		13.02	□□□□□ -0.32
CLN3-238	ENST00000569430	EFCAB8	A8MWE9	144 aa		13.02	□□□□□ -0.32
CLN3-238	ENST00000569430	POLR2D	O15514	142 aa	Known RBP	13.02	□□□□□ -0.32
CLN3-238	ENST00000569430	NACAP1	Q9BZK3	213 aa		13.02	□□□□□ -0.32
CLN3-238	ENST00000569430	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	KCNA6	P17658	529 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	GPR161	Q8N6U8	529 aa	Known RBP	13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	IGSF22	Q8N9C0	903 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	DBNL	Q9UJU6	430 aa	Known RBP	13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	CEP131	Q9UPN4	1083 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	YEATS4	O95619	227 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	CHGB	P05060	677 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	ANKRD24	Q8TF21	1146 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	HINFP	Q9BQA5	517 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	PDE11A	Q9HCR9	933 aa		13.02	□□□□□ -0.33
CLN3-238	ENST00000569430	ABCF2	Q9UG63	623 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	RNMT	O43148	476 aa	Known RBP	13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	ATP5J	P18859	108 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	PDIA3	P30101	505 aa	Known RBP	13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	ADD1	P35611	737 aa	Known RBP	13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	PPARD	Q03181	441 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	IQCB1	Q15051	598 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	AKAP2	Q9Y2D5	859 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	ARHGAP31	Q2M1Z3	1444 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	RNF187	Q5TA31	235 aa	Predicted RBP	13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	SLC9C2	Q5TAH2	1124 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	SARM1	Q6SZW1	724 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	STAM	Q92783	540 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	TNR	Q92752	1358 aa		13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	SETD1B	Q9UPS6	1966 aa	Known RBP	13.01	□□□□□ -0.33
CLN3-238	ENST00000569430	GPT	P24298	496 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	STIM1	Q13586	685 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	GCKR	Q14397	625 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	ENOX2	Q16206	610 aa	Known RBP	13	□□□□□ -0.33
CLN3-238	ENST00000569430	RRAGB	Q5VZM2	374 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	TMEM131L	A2VDJ0	1609 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	IFIT5	Q13325	482 aa	Known RBP	13	□□□□□ -0.33
CLN3-238	ENST00000569430	NBPF11	Q86T75	865 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	VPS16	Q9H269	839 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	MAPK8IP1	Q9UQF2	711 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	LDHAL6A	Q6ZMR3	332 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	KRI1	Q8N9T8	703 aa	Known RBP	13	□□□□□ -0.33
CLN3-238	ENST00000569430	ZKSCAN3	Q9BRR0	538 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	PARD6B	Q9BYG5	372 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430	CWC25	Q9NXE8	425 aa	Predicted RBP	13	□□□□□ -0.33
CLN3-238	ENST00000569430	PCDHA5	Q9Y5H7	936 aa		13	□□□□□ -0.33
CLN3-238	ENST00000569430		B4E1Z4	1266 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	SNRPA1	P09661	255 aa	Known RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	CDR1	P51861	262 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	CCZ1B	P86790	482 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	CCZ1	P86791	482 aa	Predicted RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	ODF2	Q5BJF6	829 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	E4F1	Q66K89	784 aa	Predicted RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	SPECC1L	Q69YQ0	1117 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	KRT40	Q6A162	431 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	TANGO6	Q9C0B7	1094 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	LRP2BP	Q9P2M1	347 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	MAP2	P11137	1827 aa	Known RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430		A0A1B0GUL7	405 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	GIGYF1	O75420	1035 aa	Predicted RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	USP8	P40818	1118 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	EVA1C	P58658	441 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	LONRF2	Q1L5Z9	754 aa		12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	THEMIS	Q8N1K5	641 aa	Predicted RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	CDK12	Q9NYV4	1490 aa	Predicted RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	HSPD1	P10809	573 aa	Known RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	IL15	P40933	162 aa	Predicted RBP	12.99	□□□□□ -0.33
CLN3-238	ENST00000569430	SPA17	Q15506	151 aa		12.98	□□□□□ -0.33
CLN3-238	ENST00000569430	ARMCX5	Q6P1M9	558 aa		12.98	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms