RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 RBM8AQ9Y5S9 174 aaKnown RBP36.67■■■■□ 3.46
CTCF-203ENST00000566078 PPIP5K2O43314 1243 aa36.66■■■■□ 3.46
CTCF-203ENST00000566078 LDHBP07195 334 aaKnown RBP36.66■■■■□ 3.46
CTCF-203ENST00000566078 TBC1D22AQ8WUA7 517 aa36.66■■■■□ 3.46
CTCF-203ENST00000566078 KIF2CQ99661 725 aa36.66■■■■□ 3.46
CTCF-203ENST00000566078 ECE2O60344 883 aa36.65■■■■□ 3.46
CTCF-203ENST00000566078 VPS53Q5VIR6 699 aa36.65■■■■□ 3.46
CTCF-203ENST00000566078 PODNQ7Z5L7 613 aa36.65■■■■□ 3.46
CTCF-203ENST00000566078 DZIP1Q86YF9 867 aaKnown RBP36.65■■■■□ 3.46
CTCF-203ENST00000566078 ZNF384Q8TF68 577 aa36.65■■■■□ 3.46
CTCF-203ENST00000566078 PALD1Q9ULE6 856 aa36.65■■■■□ 3.46
CTCF-203ENST00000566078 AIDAQ96BJ3 306 aa36.64■■■■□ 3.46
CTCF-203ENST00000566078 MFSD14BQ5SR56 506 aa36.63■■■■□ 3.45
CTCF-203ENST00000566078 ADGRA1Q86SQ6 560 aa36.63■■■■□ 3.45
CTCF-203ENST00000566078 LAMA4Q16363 1823 aa36.63■■■■□ 3.45
CTCF-203ENST00000566078 DSCC1Q9BVC3 393 aa36.63■■■■□ 3.45
CTCF-203ENST00000566078 FHDC1Q9C0D6 1143 aaPredicted RBP36.63■■■■□ 3.45
CTCF-203ENST00000566078 IGSF3O75054 1194 aa36.62■■■■□ 3.45
CTCF-203ENST00000566078 MBD4O95243 580 aa36.62■■■■□ 3.45
CTCF-203ENST00000566078 HSPD1P10809 573 aaKnown RBP36.62■■■■□ 3.45
CTCF-203ENST00000566078 GRIK5Q16478 980 aa36.62■■■■□ 3.45
CTCF-203ENST00000566078 ZNF277Q9NRM2 450 aaPredicted RBP36.61■■■■□ 3.45
CTCF-203ENST00000566078 COL4A5P29400 1685 aa36.61■■■■□ 3.45
CTCF-203ENST00000566078 TTLL5Q6EMB2 1281 aa36.6■■■■□ 3.45
CTCF-203ENST00000566078 TMED8Q6PL24 325 aaPredicted RBP36.6■■■■□ 3.45
CTCF-203ENST00000566078 MIGA1Q8NAN2 632 aa36.6■■■■□ 3.45
CTCF-203ENST00000566078 U3KPZ7 1027 aaPredicted RBP36.6■■■■□ 3.45
CTCF-203ENST00000566078 ANAPC15P60006 121 aa36.59■■■■□ 3.45
CTCF-203ENST00000566078 NECTIN1Q15223 517 aa36.59■■■■□ 3.45
CTCF-203ENST00000566078 ARMT1Q9H993 441 aa36.59■■■■□ 3.45
CTCF-203ENST00000566078 CDK5RAP2Q96SN8 1893 aa36.59■■■■□ 3.45
CTCF-203ENST00000566078 CREB3L3Q68CJ9 461 aa36.58■■■■□ 3.45
CTCF-203ENST00000566078 LCORLQ8N3X6 602 aa36.58■■■■□ 3.45
CTCF-203ENST00000566078 STRBPQ96SI9 672 aaKnown RBP36.58■■■■□ 3.45
CTCF-203ENST00000566078 TAOK3Q9H2K8 898 aa36.58■■■■□ 3.45
CTCF-203ENST00000566078 ADAMTSL1Q8N6G6 1762 aa36.57■■■■□ 3.45
CTCF-203ENST00000566078 MAGEB6P1A0A0J9YX57 407 aa36.57■■■■□ 3.44
CTCF-203ENST00000566078 LARGE2Q8N3Y3 721 aa36.57■■■■□ 3.44
CTCF-203ENST00000566078 VPS33BQ9H267 617 aa36.57■■■■□ 3.44
CTCF-203ENST00000566078 FOXP2O15409 715 aa36.56■■■■□ 3.44
CTCF-203ENST00000566078 GSTO1P78417 241 aa36.56■■■■□ 3.44
CTCF-203ENST00000566078 KCNQ5Q9NR82 932 aa36.56■■■■□ 3.44
CTCF-203ENST00000566078 SNX14Q9Y5W7 946 aa36.56■■■■□ 3.44
CTCF-203ENST00000566078 BAZ2AQ9UIF9 1905 aaKnown RBP36.56■■■■□ 3.44
CTCF-203ENST00000566078 DDRGK1Q96HY6 314 aa36.56■■■■□ 3.44
CTCF-203ENST00000566078 SLC27A2O14975 620 aa36.55■■■■□ 3.44
CTCF-203ENST00000566078 RASEFQ8IZ41 740 aa36.55■■■■□ 3.44
CTCF-203ENST00000566078 IARSP41252 1262 aaKnown RBP36.54■■■■□ 3.44
CTCF-203ENST00000566078 RABEP1Q15276 862 aa36.54■■■■□ 3.44
CTCF-203ENST00000566078 RNF20Q5VTR2 975 aa36.54■■■■□ 3.44
CTCF-203ENST00000566078 CERS5Q8N5B7 392 aa36.54■■■■□ 3.44
CTCF-203ENST00000566078 KCNB2Q92953 911 aa36.54■■■■□ 3.44
CTCF-203ENST00000566078 MXD3Q9BW11 206 aa36.54■■■■□ 3.44
CTCF-203ENST00000566078 NFKBIEO00221 500 aa36.53■■■■□ 3.44
CTCF-203ENST00000566078 STRIP1Q5VSL9 837 aa36.53■■■■□ 3.44
CTCF-203ENST00000566078 IL17RAQ96F46 866 aa36.53■■■■□ 3.44
CTCF-203ENST00000566078 RIOK1Q9BRS2 568 aaKnown RBP36.53■■■■□ 3.44
CTCF-203ENST00000566078 SUGT1Q9Y2Z0 365 aa36.53■■■■□ 3.44
CTCF-203ENST00000566078 DYNLL1P63167 89 aaKnown RBP36.52■■■■□ 3.44
CTCF-203ENST00000566078 DIXDC1Q155Q3 683 aa36.52■■■■□ 3.44
CTCF-203ENST00000566078 USP17L3A6NCW0 530 aa36.52■■■■□ 3.44
CTCF-203ENST00000566078 USP17L4A6NCW7 530 aa36.52■■■■□ 3.44
CTCF-203ENST00000566078 YDJCA8MPS7 323 aa36.52■■■■□ 3.44
CTCF-203ENST00000566078 ZKSCAN1P17029 563 aaPredicted RBP36.52■■■■□ 3.44
CTCF-203ENST00000566078 GNAT2P19087 354 aa36.52■■■■□ 3.44
CTCF-203ENST00000566078 USP17L1Q7RTZ2 530 aa36.52■■■■□ 3.44
CTCF-203ENST00000566078 AATFQ9NY61 560 aaKnown RBP eCLIP36.51■■■■□ 3.43
CTCF-203ENST00000566078 NAV1Q8NEY1 1877 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 MROH7-TTC4A0A0A0MT08 1334 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 APPP05067 770 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 LDHCP07864 332 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 DACT2Q5SW24 774 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 SLC4A4Q9Y6R1 1079 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 LAMB1P07942 1786 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 FOCADQ5VW36 1801 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 ECM29Q5VYK3 1845 aa36.5■■■■□ 3.43
CTCF-203ENST00000566078 LTBP3Q9NS15 1303 aa36.49■■■■□ 3.43
CTCF-203ENST00000566078 FKBP1AP62942 108 aaKnown RBP36.48■■■■□ 3.43
CTCF-203ENST00000566078 NIM1KQ8IY84 436 aa36.48■■■■□ 3.43
CTCF-203ENST00000566078 CTNNA3Q9UI47 895 aa36.48■■■■□ 3.43
CTCF-203ENST00000566078 DICER1Q9UPY3 1922 aaKnown RBP36.48■■■■□ 3.43
CTCF-203ENST00000566078 PATL2C9JE40 543 aaKnown RBP36.48■■■■□ 3.43
CTCF-203ENST00000566078 F8W031 263 aaPredicted RBP36.48■■■■□ 3.43
CTCF-203ENST00000566078 PRKAB2O43741 272 aa36.48■■■■□ 3.43
CTCF-203ENST00000566078 SLF2Q8IX21 1173 aa36.48■■■■□ 3.43
CTCF-203ENST00000566078 SYT17Q9BSW7 474 aa36.48■■■■□ 3.43
CTCF-203ENST00000566078 FGAP02671 866 aa36.47■■■■□ 3.43
CTCF-203ENST00000566078 CYP21A2P08686 494 aa36.47■■■■□ 3.43
CTCF-203ENST00000566078 IPO9Q96P70 1041 aaKnown RBP36.47■■■■□ 3.43
CTCF-203ENST00000566078 RASSF7Q02833 373 aa36.46■■■■□ 3.43
CTCF-203ENST00000566078 NOL10Q9BSC4 688 aaKnown RBP36.46■■■■□ 3.43
CTCF-203ENST00000566078 EPB41L4AQ9HCS5 686 aaPredicted RBP36.46■■■■□ 3.43
CTCF-203ENST00000566078 TTF2Q9UNY4 1162 aaKnown RBP36.46■■■■□ 3.43
CTCF-203ENST00000566078 TAF6LQ9Y6J9 622 aa36.46■■■■□ 3.43
CTCF-203ENST00000566078 SBF1O95248 1867 aa36.46■■■■□ 3.43
CTCF-203ENST00000566078 GSG1L2A8MUP6 293 aa36.45■■■■□ 3.43
CTCF-203ENST00000566078 ZMYM6O95789 1325 aa36.45■■■■□ 3.43
CTCF-203ENST00000566078 IFNL3Q8IZI9 196 aa36.45■■■■□ 3.42
CTCF-203ENST00000566078 RPAP1Q9BWH6 1393 aaPredicted RBP36.44■■■■□ 3.42
CTCF-203ENST00000566078 ZNRF3Q9ULT6 936 aa36.44■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms