RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 FAM227BQ96M60 508 aa15.41■□□□□ 0.06
CLK3-214ENST00000564096 CCDC171Q6TFL3 1326 aa15.41■□□□□ 0.06
CLK3-214ENST00000564096 PRDX5P30044 214 aa15.4■□□□□ 0.06
CLK3-214ENST00000564096 CERS3Q8IU89 383 aa15.4■□□□□ 0.06
CLK3-214ENST00000564096 AIDAQ96BJ3 306 aa15.4■□□□□ 0.06
CLK3-214ENST00000564096 NOL10Q9BSC4 688 aaKnown RBP15.4■□□□□ 0.06
CLK3-214ENST00000564096 ZNRF3Q9ULT6 936 aa15.4■□□□□ 0.06
CLK3-214ENST00000564096 MYH7P12883 1935 aa15.39■□□□□ 0.05
CLK3-214ENST00000564096 CYP7A1P22680 504 aa15.39■□□□□ 0.05
CLK3-214ENST00000564096 RASSF7Q02833 373 aa15.39■□□□□ 0.05
CLK3-214ENST00000564096 MECOMQ03112 1051 aa15.39■□□□□ 0.05
CLK3-214ENST00000564096 NSUN4Q96CB9 384 aaKnown RBP15.39■□□□□ 0.05
CLK3-214ENST00000564096 TCRBV5S4A2TA0A5A2 114 aa15.38■□□□□ 0.05
CLK3-214ENST00000564096 LDHCP07864 332 aa15.38■□□□□ 0.05
CLK3-214ENST00000564096 ARHGAP27Q6ZUM4 889 aa15.38■□□□□ 0.05
CLK3-214ENST00000564096 GPAA1O43292 621 aa15.37■□□□□ 0.05
CLK3-214ENST00000564096 GNAT2P19087 354 aa15.37■□□□□ 0.05
CLK3-214ENST00000564096 LMNB1P20700 586 aa15.37■□□□□ 0.05
CLK3-214ENST00000564096 COL4A5P29400 1685 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 MAGEB6P1A0A0J9YX57 407 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 YDJCA8MPS7 323 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 M0R2C6 588 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 MBD4O95243 580 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 BAG3O95817 575 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 EIF6P56537 245 aaKnown RBP15.36■□□□□ 0.05
CLK3-214ENST00000564096 TNIP1Q15025 636 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 DACT2Q5SW24 774 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 ZNF589Q86UQ0 364 aaPredicted RBP15.36■□□□□ 0.05
CLK3-214ENST00000564096 OSBP2Q969R2 916 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 C22orf23Q9BZE7 217 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 MROH7-TTC4A0A0A0MT08 1334 aa15.36■□□□□ 0.05
CLK3-214ENST00000564096 GRIN3BO60391 1043 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 SEC24BO95487 1268 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 PLCG2P16885 1265 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 GPR162Q16538 588 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 CIAPIN1Q6FI81 312 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 RSBN1LQ6PCB5 846 aaPredicted RBP15.35■□□□□ 0.05
CLK3-214ENST00000564096 SEC62Q99442 399 aaKnown RBP15.35■□□□□ 0.05
CLK3-214ENST00000564096 DSCC1Q9BVC3 393 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 PUS7LQ9H0K6 701 aaKnown RBP15.35■□□□□ 0.05
CLK3-214ENST00000564096 IL25Q9H293 177 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 HDAC9Q9UKV0 1011 aa15.35■□□□□ 0.05
CLK3-214ENST00000564096 TTF2Q9UNY4 1162 aaKnown RBP15.35■□□□□ 0.05
CLK3-214ENST00000564096 RPAP1Q9BWH6 1393 aaPredicted RBP15.35■□□□□ 0.05
CLK3-214ENST00000564096 PSME4Q14997 1843 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 CCDC88AQ3V6T2 1871 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 RAD17O75943 681 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 CHGBP05060 677 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 YBX3P16989 372 aaKnown RBP eCLIP15.34■□□□□ 0.05
CLK3-214ENST00000564096 RNF20Q5VTR2 975 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 CCDC129Q6ZRS4 1044 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 CERS5Q8N5B7 392 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 MIGA1Q8NAN2 632 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 TEKT1Q969V4 418 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 DDRGK1Q96HY6 314 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 TBC1D32Q96NH3 1257 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 NACAP1Q9BZK3 213 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 LSG1Q9H089 658 aaKnown RBP15.34■□□□□ 0.05
CLK3-214ENST00000564096 U3KPZ7 1027 aaPredicted RBP15.34■□□□□ 0.05
CLK3-214ENST00000564096 GAKO14976 1311 aa15.34■□□□□ 0.05
CLK3-214ENST00000564096 F8W031 263 aaPredicted RBP15.33■□□□□ 0.04
CLK3-214ENST00000564096 PSMD14O00487 310 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 RPS12P25398 132 aaKnown RBP15.33■□□□□ 0.04
CLK3-214ENST00000564096 MMP14P50281 582 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 HDLBPQ00341 1268 aaKnown RBP15.33■□□□□ 0.04
CLK3-214ENST00000564096 DIXDC1Q155Q3 683 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 SLFNL1Q499Z3 407 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 AGBL3Q8NEM8 1001 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 USP26Q9BXU7 913 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 CRNKL1Q9BZJ0 848 aaKnown RBP15.33■□□□□ 0.04
CLK3-214ENST00000564096 CTNNA3Q9UI47 895 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 ZMYM6O95789 1325 aa15.33■□□□□ 0.04
CLK3-214ENST00000564096 VIL1P09327 827 aaKnown RBP15.32■□□□□ 0.04
CLK3-214ENST00000564096 RBM25P49756 843 aaKnown RBP15.32■□□□□ 0.04
CLK3-214ENST00000564096 HHIPL2Q6UWX4 724 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 ADGRA1Q86SQ6 560 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 KIAA0825Q8IV33 1275 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 LCORLQ8N3X6 602 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 OGFOD1Q8N543 542 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 FAM163AQ96GL9 167 aaPredicted RBP15.32■□□□□ 0.04
CLK3-214ENST00000564096 ARMT1Q9H993 441 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 AATFQ9NY61 560 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLK3-214ENST00000564096 SERPINA10Q9UK55 444 aa15.32■□□□□ 0.04
CLK3-214ENST00000564096 SCN9AQ15858 1988 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 FZD9O00144 591 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 APPP05067 770 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 HSPD1P10809 573 aaKnown RBP15.31■□□□□ 0.04
CLK3-214ENST00000564096 ZKSCAN1P17029 563 aaPredicted RBP15.31■□□□□ 0.04
CLK3-214ENST00000564096 BTDP43251 543 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 CXCL9Q07325 125 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 ZNF384Q8TF68 577 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 MAP4K1Q92918 833 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 STRBPQ96SI9 672 aaKnown RBP15.31■□□□□ 0.04
CLK3-214ENST00000564096 RIOK1Q9BRS2 568 aaKnown RBP15.31■□□□□ 0.04
CLK3-214ENST00000564096 MXD3Q9BW11 206 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 KCNQ5Q9NR82 932 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 TSHZ2Q9NRE2 1034 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 RNF181Q9P0P0 153 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 DAGLAQ9Y4D2 1042 aa15.31■□□□□ 0.04
CLK3-214ENST00000564096 RBM8AQ9Y5S9 174 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms