RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 RUSC1Q9BVN2 902 aa10.47□□□□□ -0.73
SMG1-204ENST00000561940 SEMA6BQ9H3T3 888 aa10.47□□□□□ -0.73
SMG1-204ENST00000561940 DLGAP3O95886 979 aa10.46□□□□□ -0.73
SMG1-204ENST00000561940 FAAP100Q0VG06 881 aa10.46□□□□□ -0.73
SMG1-204ENST00000561940 UBL7Q96S82 380 aaPredicted RBP10.46□□□□□ -0.73
SMG1-204ENST00000561940 SSBP4Q9BWG4 385 aaPredicted RBP10.46□□□□□ -0.73
SMG1-204ENST00000561940 OSBPL7Q9BZF2 842 aa10.46□□□□□ -0.73
SMG1-204ENST00000561940 RSPO4Q2I0M5 234 aaPredicted RBP10.45□□□□□ -0.74
SMG1-204ENST00000561940 SOX17Q9H6I2 414 aaPredicted RBP10.45□□□□□ -0.74
SMG1-204ENST00000561940 LOC100289279A0A1B0GTE1 492 aa10.44□□□□□ -0.74
SMG1-204ENST00000561940 FBF1Q8TES7 1133 aa10.44□□□□□ -0.74
SMG1-204ENST00000561940 K7ELQ4 463 aaPredicted RBP10.43□□□□□ -0.74
SMG1-204ENST00000561940 ECEL1O95672 775 aa10.43□□□□□ -0.74
SMG1-204ENST00000561940 B3GALT4O96024 378 aa10.43□□□□□ -0.74
SMG1-204ENST00000561940 MAOBP27338 520 aa10.43□□□□□ -0.74
SMG1-204ENST00000561940 NKAPLQ5M9Q1 402 aa10.43□□□□□ -0.74
SMG1-204ENST00000561940 DZIP1LQ8IYY4 767 aaKnown RBP10.43□□□□□ -0.74
SMG1-204ENST00000561940 GPN3Q9UHW5 284 aaPredicted RBP10.43□□□□□ -0.74
SMG1-204ENST00000561940 CTSBP07858 339 aa10.42□□□□□ -0.74
SMG1-204ENST00000561940 PTPN12Q05209 780 aaKnown RBP10.42□□□□□ -0.74
SMG1-204ENST00000561940 POU4F3Q15319 338 aa10.42□□□□□ -0.74
SMG1-204ENST00000561940 FAM161BQ96MY7 647 aa10.42□□□□□ -0.74
SMG1-204ENST00000561940 TRIM56Q9BRZ2 755 aaKnown RBP10.42□□□□□ -0.74
SMG1-204ENST00000561940 DUSP9Q99956 384 aaKnown RBP10.41□□□□□ -0.74
SMG1-204ENST00000561940 ZC3H12CQ9C0D7 883 aaKnown RBP10.41□□□□□ -0.74
SMG1-204ENST00000561940 RNF208Q9H0X6 261 aa10.41□□□□□ -0.74
SMG1-204ENST00000561940 SPG7Q9UQ90 795 aa10.41□□□□□ -0.74
SMG1-204ENST00000561940 SART1O43290 800 aaKnown RBP10.4□□□□□ -0.74
SMG1-204ENST00000561940 ADAM23O75077 832 aa10.4□□□□□ -0.74
SMG1-204ENST00000561940 CYP11A1P05108 521 aa10.4□□□□□ -0.74
SMG1-204ENST00000561940 NUTM2GQ5VZR2 741 aa10.4□□□□□ -0.74
SMG1-204ENST00000561940 Q6ZS46 218 aa10.4□□□□□ -0.74
SMG1-204ENST00000561940 C12orf50Q8NA57 414 aaPredicted RBP10.4□□□□□ -0.74
SMG1-204ENST00000561940 DDX54Q8TDD1 881 aaKnown RBP10.4□□□□□ -0.74
SMG1-204ENST00000561940 CEP41Q9BYV8 373 aa10.4□□□□□ -0.74
SMG1-204ENST00000561940 NRSN2Q9GZP1 204 aa10.4□□□□□ -0.74
SMG1-204ENST00000561940 DYRK3O43781 588 aa10.39□□□□□ -0.75
SMG1-204ENST00000561940 PRPF40AO75400 957 aaKnown RBP10.39□□□□□ -0.75
SMG1-204ENST00000561940 FBXO24O75426 580 aa10.39□□□□□ -0.75
SMG1-204ENST00000561940 RPS26P11Q5JNZ5 115 aaPredicted RBP10.39□□□□□ -0.75
SMG1-204ENST00000561940 FDX2Q6P4F2 183 aa10.39□□□□□ -0.75
SMG1-204ENST00000561940 CORO1BQ9BR76 489 aa10.39□□□□□ -0.75
SMG1-204ENST00000561940 PARP2Q9UGN5 583 aa10.39□□□□□ -0.75
SMG1-204ENST00000561940 RECKO95980 971 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 DRD2P14416 443 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 PREPP48147 710 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 EXOSC6Q5RKV6 272 aaKnown RBP10.38□□□□□ -0.75
SMG1-204ENST00000561940 TPTE2Q6XPS3 522 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 C3orf58Q8NDZ4 430 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 TMPRSS13Q9BYE2 586 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 C12orf49Q9H741 205 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 IGSF5Q9NSI5 407 aa10.38□□□□□ -0.75
SMG1-204ENST00000561940 XRCC5P13010 732 aaKnown RBP10.37□□□□□ -0.75
SMG1-204ENST00000561940 GSTT1P30711 240 aa10.37□□□□□ -0.75
SMG1-204ENST00000561940 ARMC10Q8N2F6 343 aa10.37□□□□□ -0.75
SMG1-204ENST00000561940 UTP4Q969X6 686 aaKnown RBP10.37□□□□□ -0.75
SMG1-204ENST00000561940 TMEM39AQ9NV64 488 aa10.37□□□□□ -0.75
SMG1-204ENST00000561940 MEGF11A6BM72 1044 aa10.36□□□□□ -0.75
SMG1-204ENST00000561940 USP17L7P0C7H9 530 aa10.36□□□□□ -0.75
SMG1-204ENST00000561940 MRPL58Q14197 206 aaKnown RBP10.36□□□□□ -0.75
SMG1-204ENST00000561940 PDE3AQ14432 1141 aa10.36□□□□□ -0.75
SMG1-204ENST00000561940 ANKRD34AQ69YU3 496 aa10.36□□□□□ -0.75
SMG1-204ENST00000561940 ZFYVE1Q9HBF4 777 aa10.36□□□□□ -0.75
SMG1-204ENST00000561940 RAD18Q9NS91 495 aa10.36□□□□□ -0.75
SMG1-204ENST00000561940 GIPC1O14908 333 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 H2AFB1P0C5Y9 115 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 H2AFB2P0C5Z0 115 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 ITGB7P26010 798 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 GNA15P30679 374 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 PPP2R3AQ06190 1150 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 PRR23CQ6ZRP0 262 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 STK35Q8TDR2 534 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 FAM46AQ96IP4 442 aaKnown RBP10.35□□□□□ -0.75
SMG1-204ENST00000561940 CYP4F12Q9HCS2 524 aa10.35□□□□□ -0.75
SMG1-204ENST00000561940 BMP3P12645 472 aa10.34□□□□□ -0.75
SMG1-204ENST00000561940 EIF4BP23588 611 aaKnown RBP10.34□□□□□ -0.75
SMG1-204ENST00000561940 VAMP1P23763 118 aa10.34□□□□□ -0.75
SMG1-204ENST00000561940 TSNAXIP1Q2TAA8 658 aa10.34□□□□□ -0.75
SMG1-204ENST00000561940 AKAP4Q5JQC9 854 aa10.34□□□□□ -0.75
SMG1-204ENST00000561940 SRCIN1Q9C0H9 1055 aa10.34□□□□□ -0.75
SMG1-204ENST00000561940 KCNF1Q9H3M0 494 aa10.34□□□□□ -0.75
SMG1-204ENST00000561940 GAS2O43903 313 aaKnown RBP10.33□□□□□ -0.76
SMG1-204ENST00000561940 LIG1P18858 919 aa10.33□□□□□ -0.76
SMG1-204ENST00000561940 XPCQ01831 940 aaPredicted RBP10.33□□□□□ -0.76
SMG1-204ENST00000561940 AP3B2Q13367 1082 aa10.33□□□□□ -0.76
SMG1-204ENST00000561940 PRSS36Q5K4E3 855 aa10.33□□□□□ -0.76
SMG1-204ENST00000561940 SMG8Q8ND04 991 aaKnown RBP10.33□□□□□ -0.76
SMG1-204ENST00000561940 KCNB2Q92953 911 aa10.33□□□□□ -0.76
SMG1-204ENST00000561940 FAM8A1Q9UBU6 413 aa10.33□□□□□ -0.76
SMG1-204ENST00000561940 DHX15O43143 795 aaKnown RBP10.32□□□□□ -0.76
SMG1-204ENST00000561940 EIF4EBP3O60516 100 aaPredicted RBP10.32□□□□□ -0.76
SMG1-204ENST00000561940 DAB2P98082 770 aa10.32□□□□□ -0.76
SMG1-204ENST00000561940 LDLRAD1Q5T700 205 aa10.32□□□□□ -0.76
SMG1-204ENST00000561940 SULF2Q8IWU5 870 aa10.32□□□□□ -0.76
SMG1-204ENST00000561940 WDR89Q96FK6 387 aaPredicted RBP10.32□□□□□ -0.76
SMG1-204ENST00000561940 CCDC86Q9H6F5 360 aaKnown RBP10.32□□□□□ -0.76
SMG1-204ENST00000561940 AK5Q9Y6K8 562 aa10.32□□□□□ -0.76
SMG1-204ENST00000561940 PAGE1O75459 146 aa10.31□□□□□ -0.76
SMG1-204ENST00000561940 GSTP1P09211 210 aaKnown RBP10.31□□□□□ -0.76
SMG1-204ENST00000561940 SOX4Q06945 474 aaPredicted RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms