RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 CD2APQ9Y5K6 639 aa13.55□□□□□ -0.24
SNX1-212ENST00000560861 U3KPZ7 1027 aaPredicted RBP13.55□□□□□ -0.24
SNX1-212ENST00000560861 RPAP1Q9BWH6 1393 aaPredicted RBP13.55□□□□□ -0.24
SNX1-212ENST00000560861 CD2BP2O95400 341 aaKnown RBP13.54□□□□□ -0.24
SNX1-212ENST00000560861 PRDX5P30044 214 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 CHAF1AQ13111 956 aaPredicted RBP13.54□□□□□ -0.24
SNX1-212ENST00000560861 GRIK5Q16478 980 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 GRIPAP1Q4V328 841 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 STRBPQ96SI9 672 aaKnown RBP13.54□□□□□ -0.24
SNX1-212ENST00000560861 EYA3Q99504 573 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 TBC1D2Q9BYX2 928 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 LRP2BPQ9P2M1 347 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 TAF6LQ9Y6J9 622 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 MYH2Q9UKX2 1941 aa13.54□□□□□ -0.24
SNX1-212ENST00000560861 COL4A5P29400 1685 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 CDK5RAP2Q96SN8 1893 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 ERICH6Q7L0X2 663 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 RIOK1Q9BRS2 568 aaKnown RBP13.53□□□□□ -0.24
SNX1-212ENST00000560861 TM6SF1Q9BZW5 370 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 ZC3H12CQ9C0D7 883 aaKnown RBP13.53□□□□□ -0.24
SNX1-212ENST00000560861 RAI14Q9P0K7 980 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 ABCF2Q9UG63 623 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 ZMYM6O95789 1325 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 TIAM2Q8IVF5 1701 aa13.53□□□□□ -0.24
SNX1-212ENST00000560861 RIMBP2O15034 1052 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 C21orf2O43822 256 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 FRAT2O75474 233 aaPredicted RBP13.52□□□□□ -0.25
SNX1-212ENST00000560861 MBD4O95243 580 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 CYP7A1P22680 504 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 MECOMQ03112 1051 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 KIAA2012Q0VF49 1180 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 ALX1Q15699 326 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 CCDC93Q567U6 631 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 SPTY2D1Q68D10 685 aaPredicted RBP13.52□□□□□ -0.25
SNX1-212ENST00000560861 ZGPATQ8N5A5 531 aaKnown RBP13.52□□□□□ -0.25
SNX1-212ENST00000560861 PSMD1Q99460 953 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 TMX4Q9H1E5 349 aaPredicted RBP13.52□□□□□ -0.25
SNX1-212ENST00000560861 PIM2Q9P1W9 311 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 ZNF219Q9P2Y4 722 aaPredicted RBP13.52□□□□□ -0.25
SNX1-212ENST00000560861 JAG2Q9Y219 1238 aa13.52□□□□□ -0.25
SNX1-212ENST00000560861 CYP21A2P08686 494 aa13.51□□□□□ -0.25
SNX1-212ENST00000560861 ADCK5Q3MIX3 580 aa13.51□□□□□ -0.25
SNX1-212ENST00000560861 NAA16Q6N069 864 aaPredicted RBP13.51□□□□□ -0.25
SNX1-212ENST00000560861 LCORLQ8N3X6 602 aa13.51□□□□□ -0.25
SNX1-212ENST00000560861 SUPT20HQ8NEM7 779 aa13.51□□□□□ -0.25
SNX1-212ENST00000560861 IL27Q8NEV9 243 aa13.51□□□□□ -0.25
SNX1-212ENST00000560861 ARMT1Q9H993 441 aa13.51□□□□□ -0.25
SNX1-212ENST00000560861 EPB41L4AQ9HCS5 686 aaPredicted RBP13.51□□□□□ -0.25
SNX1-212ENST00000560861 GSG1L2A8MUP6 293 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 COL9A3Q14050 684 aaPredicted RBP13.5□□□□□ -0.25
SNX1-212ENST00000560861 DOK7Q18PE1 504 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 TTLL5Q6EMB2 1281 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 STOX1Q6ZVD7 989 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 RTKN2Q8IZC4 609 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 CERS5Q8N5B7 392 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 TBC1D22AQ8WUA7 517 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 AIDAQ96BJ3 306 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 TTC14Q96N46 770 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 ZSWIM6Q9HCJ5 1215 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 PPP1R1BQ9UD71 204 aaPredicted RBP13.5□□□□□ -0.25
SNX1-212ENST00000560861 FOCADQ5VW36 1801 aa13.5□□□□□ -0.25
SNX1-212ENST00000560861 DDX60LQ5H9U9 1706 aaKnown RBP13.5□□□□□ -0.25
SNX1-212ENST00000560861 BAZ2AQ9UIF9 1905 aaKnown RBP13.49□□□□□ -0.25
SNX1-212ENST00000560861 GAKO14976 1311 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 FGAP02671 866 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 LDHBP07195 334 aaKnown RBP13.49□□□□□ -0.25
SNX1-212ENST00000560861 BECN1Q14457 450 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 SOGA3Q5TF21 947 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 RNF20Q5VTR2 975 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 PODNQ7Z5L7 613 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 SUGT1Q9Y2Z0 365 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 LAMB1P07942 1786 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 ADAMTSL1Q8N6G6 1762 aa13.49□□□□□ -0.25
SNX1-212ENST00000560861 MAGEB6P1A0A0J9YX57 407 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 PATL2C9JE40 543 aaKnown RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 PRKAB2O43741 272 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 ZKSCAN1P17029 563 aaPredicted RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 GNAT2P19087 354 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 SLC4A3P48751 1232 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 PPP4CP60510 307 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 FKBP1AP62942 108 aaKnown RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 DYNLL1P63167 89 aaKnown RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 GTF2IP78347 998 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 AOC3Q16853 763 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 DALRD3Q5D0E6 543 aaKnown RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 MFSD14BQ5SR56 506 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 MIGA1Q8NAN2 632 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 FAM163AQ96GL9 167 aaPredicted RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 UPF3BQ9BZI7 483 aaKnown RBP13.48□□□□□ -0.25
SNX1-212ENST00000560861 NBPF3Q9H094 633 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 VPS33BQ9H267 617 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 DBNDD1Q9H9R9 158 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 CTNNA3Q9UI47 895 aa13.48□□□□□ -0.25
SNX1-212ENST00000560861 MROH7-TTC4A0A0A0MT08 1334 aa13.47□□□□□ -0.25
SNX1-212ENST00000560861 NAV1Q8NEY1 1877 aa13.47□□□□□ -0.25
SNX1-212ENST00000560861 ECE2O60344 883 aa13.47□□□□□ -0.25
SNX1-212ENST00000560861 NEK4P51957 841 aa13.47□□□□□ -0.25
SNX1-212ENST00000560861 KRT32Q14532 448 aa13.47□□□□□ -0.25
SNX1-212ENST00000560861 DIXDC1Q155Q3 683 aa13.47□□□□□ -0.25
SNX1-212ENST00000560861 DACT2Q5SW24 774 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms