RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 WBP1LQ9NX94 342 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 DBNLQ9UJU6 430 aaKnown RBP11.52□□□□□ -0.57
LDLR-211ENST00000560173 SUGT1Q9Y2Z0 365 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 PCDHAC2Q9Y5I4 1007 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 PITPNM2Q9BZ72 1349 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 SALL1Q9NSC2 1324 aa11.52□□□□□ -0.57
LDLR-211ENST00000560173 SPDYE2BA6NHP3 402 aa11.51□□□□□ -0.57
LDLR-211ENST00000560173 SPDYE6P0CI01 402 aa11.51□□□□□ -0.57
LDLR-211ENST00000560173 ARID4AP29374 1257 aaPredicted RBP11.51□□□□□ -0.57
LDLR-211ENST00000560173 KIF1BPQ96EK5 621 aa11.51□□□□□ -0.57
LDLR-211ENST00000560173 TLR7Q9NYK1 1049 aaKnown RBP11.51□□□□□ -0.57
LDLR-211ENST00000560173 SERPINA10Q9UK55 444 aa11.51□□□□□ -0.57
LDLR-211ENST00000560173 PCDHB15Q9Y5E8 787 aa11.51□□□□□ -0.57
LDLR-211ENST00000560173 AOX1Q06278 1338 aa11.51□□□□□ -0.57
LDLR-211ENST00000560173 TMEM88BA6NKF7 163 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 APBB1O00213 710 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 RAB11FIP3O75154 756 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 NEFLP07196 543 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 UQCRFS1P1P0C7P4 283 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 HSPA8P11142 646 aaKnown RBP11.5□□□□□ -0.57
LDLR-211ENST00000560173 CRKP46108 304 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 RGS19P49795 217 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 HDLBPQ00341 1268 aaKnown RBP11.5□□□□□ -0.57
LDLR-211ENST00000560173 DLK2Q6UY11 383 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 AACSQ86V21 672 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 SULF1Q8IWU6 871 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 IL1RAPL2Q9NP60 686 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 HMG20BQ9P0W2 317 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 SUPT16HQ9Y5B9 1047 aaKnown RBP11.5□□□□□ -0.57
LDLR-211ENST00000560173 MAST3O60307 1309 aa11.5□□□□□ -0.57
LDLR-211ENST00000560173 POLR2AP24928 1970 aaKnown RBP11.49□□□□□ -0.57
LDLR-211ENST00000560173 PRDX5P30044 214 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 MCAMP43121 646 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 CST9Q5W186 159 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 PI16Q6UXB8 463 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 APOBEC3FQ8IUX4 373 aaKnown RBP11.49□□□□□ -0.57
LDLR-211ENST00000560173 SPATA5Q8NB90 893 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 TEKT1Q969V4 418 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 CDCA5Q96FF9 252 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 ZNF512BQ96KM6 892 aaPredicted RBP11.49□□□□□ -0.57
LDLR-211ENST00000560173 PRMT6Q96LA8 375 aaPredicted RBP11.49□□□□□ -0.57
LDLR-211ENST00000560173 MRIQ9BWK5 157 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 CCDC8Q9H0W5 538 aaPredicted RBP11.49□□□□□ -0.57
LDLR-211ENST00000560173 THSD7BQ9C0I4 1608 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 TRPM7Q96QT4 1865 aa11.49□□□□□ -0.57
LDLR-211ENST00000560173 CCDC85CA6NKD9 419 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 CELF2O95319 508 aaKnown RBP11.48□□□□□ -0.57
LDLR-211ENST00000560173 LDHBP07195 334 aaKnown RBP11.48□□□□□ -0.57
LDLR-211ENST00000560173 RBM5P52756 815 aaKnown RBP eCLIP11.48□□□□□ -0.57
LDLR-211ENST00000560173 AAMPQ13685 434 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 SPDYE2Q495Y8 402 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 CCDC158Q5M9N0 1113 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 TTC39AQ5SRH9 613 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 HHIPL2Q6UWX4 724 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 CLASRPQ8N2M8 674 aaKnown RBP11.48□□□□□ -0.57
LDLR-211ENST00000560173 ZGPATQ8N5A5 531 aaKnown RBP11.48□□□□□ -0.57
LDLR-211ENST00000560173 ZDHHC15Q96MV8 337 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 DCTPP1Q9H773 170 aa11.48□□□□□ -0.57
LDLR-211ENST00000560173 SCAF8Q9UPN6 1271 aaKnown RBP11.48□□□□□ -0.57
LDLR-211ENST00000560173 ECM29Q5VYK3 1845 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 CLRN2A0PK11 232 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 MYO1BO43795 1136 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 DIXDC1Q155Q3 683 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 APOBEC3HQ6NTF7 200 aaKnown RBP11.47□□□□□ -0.57
LDLR-211ENST00000560173 LRRCC1Q9C099 1032 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 ZNF408Q9H9D4 720 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 SNRKQ9NRH2 765 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 ZNF70Q9UC06 446 aaPredicted RBP11.47□□□□□ -0.57
LDLR-211ENST00000560173 ABCF2Q9UG63 623 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 DAGLAQ9Y4D2 1042 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 AKAP11Q9UKA4 1901 aa11.47□□□□□ -0.57
LDLR-211ENST00000560173 GAKO14976 1311 aa11.46□□□□□ -0.57
LDLR-211ENST00000560173 SPTY2D1Q68D10 685 aaPredicted RBP11.46□□□□□ -0.57
LDLR-211ENST00000560173 TBC1D9Q6ZT07 1266 aa11.46□□□□□ -0.57
LDLR-211ENST00000560173 EXOC6Q8TAG9 804 aa11.46□□□□□ -0.57
LDLR-211ENST00000560173 DEFB129Q9H1M3 183 aa11.46□□□□□ -0.57
LDLR-211ENST00000560173 TDRD3Q9H7E2 651 aaKnown RBP11.46□□□□□ -0.57
LDLR-211ENST00000560173 VEZTQ9HBM0 779 aa11.46□□□□□ -0.57
LDLR-211ENST00000560173 ABT1Q9ULW3 272 aaKnown RBP11.46□□□□□ -0.57
LDLR-211ENST00000560173 RASSF10A6NK89 507 aa11.45□□□□□ -0.58
LDLR-211ENST00000560173 SMARCA5O60264 1052 aaPredicted RBP11.45□□□□□ -0.58
LDLR-211ENST00000560173 IFIT2P09913 472 aaKnown RBP11.45□□□□□ -0.58
LDLR-211ENST00000560173 HDAC1Q13547 482 aaPredicted RBP11.45□□□□□ -0.58
LDLR-211ENST00000560173 ERICH6Q7L0X2 663 aa11.45□□□□□ -0.58
LDLR-211ENST00000560173 DZIP1Q86YF9 867 aaKnown RBP11.45□□□□□ -0.58
LDLR-211ENST00000560173 ZNF384Q8TF68 577 aa11.45□□□□□ -0.58
LDLR-211ENST00000560173 PPP2R3BQ9Y5P8 575 aa11.45□□□□□ -0.58
LDLR-211ENST00000560173 TLL2Q9Y6L7 1015 aa11.45□□□□□ -0.58
LDLR-211ENST00000560173 WDR33Q9C0J8 1336 aaKnown RBP11.44□□□□□ -0.58
LDLR-211ENST00000560173 CYP2E1P05181 493 aaPredicted RBP11.44□□□□□ -0.58
LDLR-211ENST00000560173 ZAP70P43403 619 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 MAP2K1Q02750 393 aaPredicted RBP11.44□□□□□ -0.58
LDLR-211ENST00000560173 MECOMQ03112 1051 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 TNFAIP1Q13829 316 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 DEFB115Q30KQ5 88 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 FKBP1CQ5VVH2 108 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 PRAMEF18Q5VWM3 479 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 SAPCD2Q86UD0 394 aa11.44□□□□□ -0.58
LDLR-211ENST00000560173 NSUN4Q96CB9 384 aaKnown RBP11.44□□□□□ -0.58
LDLR-211ENST00000560173 FAM163AQ96GL9 167 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms