RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 TXLNAP40222 546 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 TMEM259Q4ZIN3 620 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 NUDT8Q8WV74 236 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 FAM117AQ9C073 453 aa10.42□□□□□ -0.74
SPG11-213ENST00000558988 SLC51AQ86UW1 340 aa10.41□□□□□ -0.74
SPG11-213ENST00000558988 NLRP13Q86W25 1043 aa10.41□□□□□ -0.74
SPG11-213ENST00000558988 TONSLQ96HA7 1378 aa10.4□□□□□ -0.74
SPG11-213ENST00000558988 NRKQ7Z2Y5 1582 aa10.4□□□□□ -0.74
SPG11-213ENST00000558988 GPR37L1O60883 481 aa10.4□□□□□ -0.74
SPG11-213ENST00000558988 OXLD1Q5BKU9 147 aa10.4□□□□□ -0.74
SPG11-213ENST00000558988 SPATA31A1Q5TZJ5 1347 aa10.39□□□□□ -0.75
SPG11-213ENST00000558988 AFF1P51825 1210 aaKnown RBP10.39□□□□□ -0.75
SPG11-213ENST00000558988 LARP1Q6PKG0 1096 aaKnown RBP10.39□□□□□ -0.75
SPG11-213ENST00000558988 DDRGK1Q96HY6 314 aa10.39□□□□□ -0.75
SPG11-213ENST00000558988 CARD11Q9BXL7 1154 aa10.39□□□□□ -0.75
SPG11-213ENST00000558988 USP6P35125 1406 aa10.39□□□□□ -0.75
SPG11-213ENST00000558988 SSH2Q76I76 1423 aa10.39□□□□□ -0.75
SPG11-213ENST00000558988 USP19O94966 1318 aa10.38□□□□□ -0.75
SPG11-213ENST00000558988 A6NJY4 79 aa10.38□□□□□ -0.75
SPG11-213ENST00000558988 GCP02774 474 aa10.38□□□□□ -0.75
SPG11-213ENST00000558988 MTFR1Q15390 333 aa10.38□□□□□ -0.75
SPG11-213ENST00000558988 PHTF2Q8N3S3 785 aa10.38□□□□□ -0.75
SPG11-213ENST00000558988 CAMTA1Q9Y6Y1 1673 aa10.38□□□□□ -0.75
SPG11-213ENST00000558988 TBC1D8BQ0IIM8 1120 aa10.37□□□□□ -0.75
SPG11-213ENST00000558988 TMC1Q8TDI8 760 aa10.37□□□□□ -0.75
SPG11-213ENST00000558988 SLC4A9Q96Q91 983 aa10.37□□□□□ -0.75
SPG11-213ENST00000558988 KIAA1324LA8MWY0 1029 aaPredicted RBP10.36□□□□□ -0.75
SPG11-213ENST00000558988 TRIM37O94972 964 aa10.36□□□□□ -0.75
SPG11-213ENST00000558988 PDE3BQ13370 1112 aa10.36□□□□□ -0.75
SPG11-213ENST00000558988 LCE4AQ5TA78 99 aa10.36□□□□□ -0.75
SPG11-213ENST00000558988 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.36□□□□□ -0.75
SPG11-213ENST00000558988 THSD7AQ9UPZ6 1657 aa10.36□□□□□ -0.75
SPG11-213ENST00000558988 PIK3C2AO00443 1686 aa10.35□□□□□ -0.75
SPG11-213ENST00000558988 TCP11L2Q8N4U5 519 aa10.35□□□□□ -0.75
SPG11-213ENST00000558988 NEUROD4Q9HD90 331 aa10.35□□□□□ -0.75
SPG11-213ENST00000558988 CPDO75976 1380 aa10.35□□□□□ -0.75
SPG11-213ENST00000558988 KTN1Q86UP2 1357 aaKnown RBP10.35□□□□□ -0.75
SPG11-213ENST00000558988 TTC21BQ7Z4L5 1316 aa10.34□□□□□ -0.75
SPG11-213ENST00000558988 ADAMTS4O75173 837 aa10.34□□□□□ -0.75
SPG11-213ENST00000558988 TRIM26Q12899 539 aaPredicted RBP10.34□□□□□ -0.75
SPG11-213ENST00000558988 TOM1L2Q6ZVM7 507 aa10.34□□□□□ -0.75
SPG11-213ENST00000558988 SLC6A14Q9UN76 642 aa10.34□□□□□ -0.75
SPG11-213ENST00000558988 COL5A2P05997 1499 aaPredicted RBP10.34□□□□□ -0.75
SPG11-213ENST00000558988 LMO7Q8WWI1 1683 aa10.34□□□□□ -0.75
SPG11-213ENST00000558988 RGPD1P0DJD0 1748 aa10.33□□□□□ -0.76
SPG11-213ENST00000558988 TMEM229AB2RXF0 380 aa10.33□□□□□ -0.76
SPG11-213ENST00000558988 FAM196AQ6ZSG2 479 aa10.33□□□□□ -0.76
SPG11-213ENST00000558988 FBXO11Q86XK2 927 aa10.33□□□□□ -0.76
SPG11-213ENST00000558988 ZDHHC1Q8WTX9 485 aa10.33□□□□□ -0.76
SPG11-213ENST00000558988 UBE2OQ9C0C9 1292 aaKnown RBP10.33□□□□□ -0.76
SPG11-213ENST00000558988 IGFLR1Q9H665 355 aa10.33□□□□□ -0.76
SPG11-213ENST00000558988 AKAP12Q02952 1782 aa10.32□□□□□ -0.76
SPG11-213ENST00000558988 BRD4O60885 1362 aaPredicted RBP10.32□□□□□ -0.76
SPG11-213ENST00000558988 EZH2Q15910 746 aaKnown RBP10.32□□□□□ -0.76
SPG11-213ENST00000558988 NME9Q86XW9 330 aa10.32□□□□□ -0.76
SPG11-213ENST00000558988 C7orf43Q8WVR3 580 aa10.32□□□□□ -0.76
SPG11-213ENST00000558988 BHMTQ93088 406 aa10.32□□□□□ -0.76
SPG11-213ENST00000558988 KDM4CQ9H3R0 1056 aa10.32□□□□□ -0.76
SPG11-213ENST00000558988 SLIT3O75094 1523 aa10.32□□□□□ -0.76
SPG11-213ENST00000558988 AATKQ6ZMQ8 1374 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 TNS1Q9HBL0 1735 aaKnown RBP10.31□□□□□ -0.76
SPG11-213ENST00000558988 EML1O00423 815 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 R3HDM1Q15032 1099 aaKnown RBP10.31□□□□□ -0.76
SPG11-213ENST00000558988 PSAPL1Q6NUJ1 521 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 HDGFL2Q7Z4V5 671 aaPredicted RBP10.31□□□□□ -0.76
SPG11-213ENST00000558988 KRTAP4-5Q9BYR2 181 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 SLC12A5Q9H2X9 1139 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 GPBP1L1Q9HC44 474 aaPredicted RBP10.31□□□□□ -0.76
SPG11-213ENST00000558988 CRB1P82279 1406 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 CPSF1Q10570 1443 aaKnown RBP10.31□□□□□ -0.76
SPG11-213ENST00000558988 TTC21AQ8NDW8 1320 aa10.31□□□□□ -0.76
SPG11-213ENST00000558988 TGFB1P01137 390 aa10.3□□□□□ -0.76
SPG11-213ENST00000558988 KCNH5Q8NCM2 988 aa10.3□□□□□ -0.76
SPG11-213ENST00000558988 RGPD5Q99666 1765 aa10.29□□□□□ -0.76
SPG11-213ENST00000558988 SLFNL1Q499Z3 407 aa10.29□□□□□ -0.76
SPG11-213ENST00000558988 DZIP1LQ8IYY4 767 aaKnown RBP10.29□□□□□ -0.76
SPG11-213ENST00000558988 BRD7Q9NPI1 651 aa10.29□□□□□ -0.76
SPG11-213ENST00000558988 THRAP3Q9Y2W1 955 aaKnown RBP10.29□□□□□ -0.76
SPG11-213ENST00000558988 MON2Q7Z3U7 1717 aa10.29□□□□□ -0.76
SPG11-213ENST00000558988 EP400Q96L91 3159 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 ST20-MTHFSA0A0A6YYL1 179 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 DDB1Q16531 1140 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 MSL1Q68DK7 614 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 IGF2-ASQ6U949 168 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 ARHGEF25Q86VW2 580 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 DTWD1Q8N5C7 304 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 PCGF6Q9BYE7 350 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 NAGPAQ9UK23 515 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 WDR17Q8IZU2 1322 aa10.28□□□□□ -0.76
SPG11-213ENST00000558988 SBNO2Q9Y2G9 1366 aa10.27□□□□□ -0.76
SPG11-213ENST00000558988 COL18A1P39060 1754 aa10.27□□□□□ -0.77
SPG11-213ENST00000558988 LRRC37A3O60309 1634 aa10.27□□□□□ -0.77
SPG11-213ENST00000558988 RGS9O75916 674 aaPredicted RBP10.27□□□□□ -0.77
SPG11-213ENST00000558988 CEP63Q96MT8 703 aa10.27□□□□□ -0.77
SPG11-213ENST00000558988 NLRP2Q9NX02 1062 aa10.27□□□□□ -0.77
SPG11-213ENST00000558988 TERF2IPQ9NYB0 399 aa10.27□□□□□ -0.77
SPG11-213ENST00000558988 NFAT5O94916 1531 aa10.27□□□□□ -0.77
SPG11-213ENST00000558988 PARP4Q9UKK3 1724 aaKnown RBP10.27□□□□□ -0.77
SPG11-213ENST00000558988 A0A1W2PP64 1363 aa10.26□□□□□ -0.77
SPG11-213ENST00000558988 OVOS2A0A0G2JMS6 1433 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms