RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 CBX1P83916 185 aa22.63■■□□□ 1.21
PCF11-203ENST00000530304 MCAMP43121 646 aa22.63■■□□□ 1.21
PCF11-203ENST00000530304 ZRSR1Q15695 479 aaKnown RBP22.63■■□□□ 1.21
PCF11-203ENST00000530304 ZNF592Q92610 1267 aa22.63■■□□□ 1.21
PCF11-203ENST00000530304 WDR19Q8NEZ3 1342 aa22.63■■□□□ 1.21
PCF11-203ENST00000530304 COL5A2P05997 1499 aaPredicted RBP22.63■■□□□ 1.21
PCF11-203ENST00000530304 KIF23Q02241 960 aaPredicted RBP22.62■■□□□ 1.21
PCF11-203ENST00000530304 SYCP1Q15431 976 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 KIF6Q6ZMV9 814 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 NBPF11Q86T75 865 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 SYNE4Q8N205 404 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 RIPOR2Q9Y4F9 1068 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 ZNF202O95125 648 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 METTL24Q5JXM2 366 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 ANO1Q5XXA6 986 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 BPIFA3Q9BQP9 254 aa22.62■■□□□ 1.21
PCF11-203ENST00000530304 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.62■■□□□ 1.213e-11■□□□□ 10.1
PCF11-203ENST00000530304 CARD10Q9BWT7 1032 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 NBPF3Q9H094 633 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 PRDM10Q9NQV6 1147 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 DENND2AQ9ULE3 1009 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 DDX60Q8IY21 1712 aaKnown RBP22.61■■□□□ 1.21
PCF11-203ENST00000530304 LDHAL6AQ6ZMR3 332 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 NYAP1Q6ZVC0 841 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 RIC1Q4ADV7 1423 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 MYH7P12883 1935 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 SLC3A2P08195 630 aaKnown RBP22.61■■□□□ 1.21
PCF11-203ENST00000530304 ADD2P35612 726 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 TRDNQ13061 729 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 PTPN14Q15678 1187 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 AXDND1Q5T1B0 1012 aaPredicted RBP22.61■■□□□ 1.21
PCF11-203ENST00000530304 TMOD3Q9NYL9 352 aa22.61■■□□□ 1.21
PCF11-203ENST00000530304 SLC9C2Q5TAH2 1124 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 BRINP3Q76B58 766 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 DNAJC10Q8IXB1 793 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 BIN1O00499 593 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 CMA1P23946 247 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 U2AF2P26368 475 aaKnown RBP eCLIP22.6■■□□□ 1.21
PCF11-203ENST00000530304 GSDMDP57764 484 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 NKX2-3Q8TAU0 364 aa22.6■■□□□ 1.21
PCF11-203ENST00000530304 SHANK3Q9BYB0 1731 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 ITGA6P23229 1130 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 OSBPL5Q9H0X9 879 aaPredicted RBP22.59■■□□□ 1.21
PCF11-203ENST00000530304 TRMT1Q9NXH9 659 aaKnown RBP22.59■■□□□ 1.21
PCF11-203ENST00000530304 ANGEL1Q9UNK9 670 aaKnown RBP22.59■■□□□ 1.21
PCF11-203ENST00000530304 WDHD1O75717 1129 aaPredicted RBP22.59■■□□□ 1.21
PCF11-203ENST00000530304 PFKFB1P16118 471 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 AIFM3Q96NN9 605 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 GREM2Q9H772 168 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 STRN4Q9NRL3 753 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 IMPACTQ9P2X3 320 aa22.59■■□□□ 1.21
PCF11-203ENST00000530304 C4AP0C0L4 1744 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 C4BP0C0L5 1744 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 NLRP12P59046 1061 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 NAA30Q147X3 362 aaPredicted RBP22.58■■□□□ 1.21
PCF11-203ENST00000530304 CYB5R4Q7L1T6 521 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 TBC1D10CQ8IV04 446 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 CCAR2Q8N163 923 aaKnown RBP22.58■■□□□ 1.21
PCF11-203ENST00000530304 TTLL11Q8NHH1 800 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 ASAP1Q9ULH1 1129 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 ZMYM6O95789 1325 aa22.58■■□□□ 1.21
PCF11-203ENST00000530304 AKAP11Q9UKA4 1901 aa22.58■■□□□ 1.2
PCF11-203ENST00000530304 SPDYE4A6NLX3 237 aa22.58■■□□□ 1.2
PCF11-203ENST00000530304 MARCKSP29966 332 aaPredicted RBP22.58■■□□□ 1.2
PCF11-203ENST00000530304 SLC39A14Q15043 492 aa22.58■■□□□ 1.2
PCF11-203ENST00000530304 XPO4Q9C0E2 1151 aaKnown RBP22.58■■□□□ 1.2
PCF11-203ENST00000530304 GPTP24298 496 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 METAP2P50579 478 aaKnown RBP eCLIP22.57■■□□□ 1.23e-7■■■□□ 15.4
PCF11-203ENST00000530304 HLFQ16534 295 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 GIGYF2Q6Y7W6 1299 aaKnown RBP22.57■■□□□ 1.2
PCF11-203ENST00000530304 ALG1Q9BT22 464 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 TEX13AQ9BXU3 409 aaPredicted RBP22.57■■□□□ 1.2
PCF11-203ENST00000530304 SMC2O95347 1197 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 APPP05067 770 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 CNNM1Q9NRU3 951 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 KCND1Q9NSA2 647 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 IFNKQ9P0W0 207 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 PRDM4Q9UKN5 801 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 MAP3K15Q6ZN16 1313 aa22.57■■□□□ 1.2
PCF11-203ENST00000530304 RXRAP19793 462 aa22.56■■□□□ 1.2
PCF11-203ENST00000530304 TTF1Q15361 905 aaPredicted RBP22.56■■□□□ 1.2
PCF11-203ENST00000530304 RGS22Q8NE09 1264 aa22.56■■□□□ 1.2
PCF11-203ENST00000530304 ZNF512BQ96KM6 892 aaPredicted RBP22.56■■□□□ 1.2
PCF11-203ENST00000530304 PIH1D3Q9NQM4 214 aaKnown RBP22.56■■□□□ 1.2
PCF11-203ENST00000530304 MROH7-TTC4A0A0A0MT08 1334 aa22.56■■□□□ 1.2
PCF11-203ENST00000530304 CDHR2Q9BYE9 1310 aa22.56■■□□□ 1.2
PCF11-203ENST00000530304 SH2B2O14492 632 aaPredicted RBP22.56■■□□□ 1.2
PCF11-203ENST00000530304 IDH1O75874 414 aaKnown RBP22.56■■□□□ 1.2
PCF11-203ENST00000530304 ANKRD18BA2A2Z9 1011 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 ZSCAN20P17040 1043 aaPredicted RBP22.55■■□□□ 1.2
PCF11-203ENST00000530304 NCAPHQ15003 741 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 NLRP10Q86W26 655 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 VPS37DQ86XT2 251 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 STARD3NLO95772 234 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 VGLL2Q8N8G2 317 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 PIGBQ92521 554 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 TOGARAM1Q9Y4F4 1720 aa22.55■■□□□ 1.2
PCF11-203ENST00000530304 CDKL5O76039 1030 aa22.54■■□□□ 1.2
PCF11-203ENST00000530304 CDC27P30260 824 aa22.54■■□□□ 1.2
PCF11-203ENST00000530304 TPM4P67936 248 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms