RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ENC1O14682 589 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 EIF4EBP3O60516 100 aaPredicted RBP7.48□□□□□ -1.21
CD44-215ENST00000525241 ITGB2P05107 769 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 ITGAEP38570 1179 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 CHRNA4P43681 627 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 LDLRAD1Q5T700 205 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 CD163Q86VB7 1156 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 TMEM151AQ8N4L1 468 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 ZNF428Q96B54 188 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 CEP44Q9C0F1 390 aa7.48□□□□□ -1.21
CD44-215ENST00000525241 MRPL18Q9H0U6 180 aaKnown RBP7.48□□□□□ -1.21
CD44-215ENST00000525241 TTF2Q9UNY4 1162 aaKnown RBP7.48□□□□□ -1.21
CD44-215ENST00000525241 LOC100289279A0A1B0GTE1 492 aa7.47□□□□□ -1.21
CD44-215ENST00000525241 C1QTNF9BB2RNN3 333 aa7.47□□□□□ -1.21
CD44-215ENST00000525241 PPP2R3AQ06190 1150 aa7.47□□□□□ -1.21
CD44-215ENST00000525241 TAF1CQ15572 869 aaPredicted RBP7.47□□□□□ -1.21
CD44-215ENST00000525241 KIAA1211Q6ZU35 1233 aa7.47□□□□□ -1.21
CD44-215ENST00000525241 TMEM130Q8N3G9 435 aa7.47□□□□□ -1.21
CD44-215ENST00000525241 DDX54Q8TDD1 881 aaKnown RBP7.47□□□□□ -1.21
CD44-215ENST00000525241 UBASH3BQ8TF42 649 aa7.47□□□□□ -1.21
CD44-215ENST00000525241 KIAA1522Q9P206 1035 aaPredicted RBP7.47□□□□□ -1.21
CD44-215ENST00000525241 PAGE1O75459 146 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 DLGAP3O95886 979 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 CYP11A1P05108 521 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 CELA3AP09093 270 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 VAMP1P23763 118 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 ST13P50502 369 aaKnown RBP7.46□□□□□ -1.22
CD44-215ENST00000525241 NRG1Q02297 640 aaPredicted RBP7.46□□□□□ -1.22
CD44-215ENST00000525241 AP3B2Q13367 1082 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 ADGRE1Q14246 886 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 MBTPS1Q14703 1052 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 DUOXA2Q1HG44 320 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 SV2BQ7L1I2 683 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.46□□□□□ -1.22
CD44-215ENST00000525241 STK35Q8TDR2 534 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 BCL11AQ9H165 835 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 USP21Q9UK80 565 aa7.46□□□□□ -1.22
CD44-215ENST00000525241 F8W735 103 aaPredicted RBP7.45□□□□□ -1.22
CD44-215ENST00000525241 ECEL1O95672 775 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 CTSBP07858 339 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 MAOBP27338 520 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 POU4F3Q15319 338 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 ACAD11Q709F0 780 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 MRRFQ96E11 262 aaKnown RBP7.45□□□□□ -1.22
CD44-215ENST00000525241 USP26Q9BXU7 913 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 BACH2Q9BYV9 841 aa7.45□□□□□ -1.22
CD44-215ENST00000525241 ALX3O95076 343 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 BMP6P22004 513 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 NME2P22392 152 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 CCDC85BQ15834 202 aaPredicted RBP7.44□□□□□ -1.22
CD44-215ENST00000525241 PLA2G4EQ3MJ16 856 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 PDZD3Q86UT5 571 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 SULF2Q8IWU5 870 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 WFDC12Q8WWY7 111 aa7.44□□□□□ -1.22
CD44-215ENST00000525241 RECKO95980 971 aa7.43□□□□□ -1.22
CD44-215ENST00000525241 ARNTP27540 789 aa7.43□□□□□ -1.22
CD44-215ENST00000525241 NOS3P29474 1203 aa7.43□□□□□ -1.22
CD44-215ENST00000525241 AGGF1Q8N302 714 aaeCLIP7.43□□□□□ -1.22
CD44-215ENST00000525241 CORO1BQ9BR76 489 aa7.43□□□□□ -1.22
CD44-215ENST00000525241 NOC4LQ9BVI4 516 aaKnown RBP7.43□□□□□ -1.22
CD44-215ENST00000525241 TMPRSS13Q9BYE2 586 aa7.43□□□□□ -1.22
CD44-215ENST00000525241 AKTIPQ9H8T0 292 aa7.43□□□□□ -1.22
CD44-215ENST00000525241 MEGF11A6BM72 1044 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 GSTP1P09211 210 aaKnown RBP7.42□□□□□ -1.22
CD44-215ENST00000525241 IREB2P48200 963 aaKnown RBP7.42□□□□□ -1.22
CD44-215ENST00000525241 ZNF252P-AS1Q0IIN9 211 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 RASIP1Q5U651 963 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 Q6ZS46 218 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 TXNRD3Q86VQ6 643 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 TMEM87AQ8NBN3 555 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 RUSC1Q9BVN2 902 aa7.42□□□□□ -1.22
CD44-215ENST00000525241 TSNAXIP1Q2TAA8 658 aa7.41□□□□□ -1.22
CD44-215ENST00000525241 EXOSC6Q5RKV6 272 aaKnown RBP7.41□□□□□ -1.22
CD44-215ENST00000525241 PCNX4Q63HM2 1172 aa7.41□□□□□ -1.22
CD44-215ENST00000525241 GRIN3AQ8TCU5 1115 aa7.41□□□□□ -1.22
CD44-215ENST00000525241 EMILIN2Q9BXX0 1053 aa7.41□□□□□ -1.22
CD44-215ENST00000525241 ZC3H12CQ9C0D7 883 aaKnown RBP7.41□□□□□ -1.22
CD44-215ENST00000525241 RNF208Q9H0X6 261 aa7.41□□□□□ -1.22
CD44-215ENST00000525241 CCDC86Q9H6F5 360 aaKnown RBP7.41□□□□□ -1.22
CD44-215ENST00000525241 RBM25P49756 843 aaKnown RBP7.4□□□□□ -1.22
CD44-215ENST00000525241 SUGCTQ9HAC7 445 aa7.4□□□□□ -1.22
CD44-215ENST00000525241 CACNA2D2Q9NY47 1150 aa7.4□□□□□ -1.22
CD44-215ENST00000525241 SAMM50Q9Y512 469 aa7.4□□□□□ -1.22
CD44-215ENST00000525241 GATA4P43694 442 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 LIG3P49916 1009 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 MAP3K11Q16584 847 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 TTBK2Q6IQ55 1244 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 MPRIPQ6WCQ1 1025 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 KCNB2Q92953 911 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 WDR89Q96FK6 387 aaPredicted RBP7.39□□□□□ -1.23
CD44-215ENST00000525241 MEGF10Q96KG7 1140 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 SSBP4Q9BWG4 385 aaPredicted RBP7.39□□□□□ -1.23
CD44-215ENST00000525241 CBX8Q9HC52 389 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 KRT82Q9NSB4 513 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 CYP8B1Q9UNU6 501 aa7.39□□□□□ -1.23
CD44-215ENST00000525241 ZNF862O60290 1169 aa7.38□□□□□ -1.23
CD44-215ENST00000525241 LIG1P18858 919 aa7.38□□□□□ -1.23
CD44-215ENST00000525241 RPS26P62854 115 aaKnown RBP7.38□□□□□ -1.23
CD44-215ENST00000525241 PDE3AQ14432 1141 aa7.38□□□□□ -1.23
CD44-215ENST00000525241 LRRC14Q15048 493 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms