RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PLCD4Q9BRC7 762 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 TNIP1Q15025 636 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 ERCC6LQ2NKX8 1250 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 TRAPPC3LQ5T215 181 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 XAGE2Q96GT9 111 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 LUC7LQ9NQ29 371 aaKnown RBP14.95□□□□□ -0.02
TCOF1-213ENST00000514442 KIF1BO60333 1816 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 PHKG2P15735 406 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 MAP2K2P36507 400 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 HEATR3Q7Z4Q2 680 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 KIAA1328Q86T90 577 aa14.95□□□□□ -0.02
TCOF1-213ENST00000514442 SYNMO15061 1565 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 NLRP1Q9C000 1473 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 MORC2Q9Y6X9 1032 aaPredicted RBP14.94□□□□□ -0.02
TCOF1-213ENST00000514442 KIAA0232Q92628 1395 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 ELP1O95163 1332 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 GIGYF1O75420 1035 aaPredicted RBP14.94□□□□□ -0.02
TCOF1-213ENST00000514442 ENOX2Q16206 610 aaKnown RBP14.94□□□□□ -0.02
TCOF1-213ENST00000514442 CLSTN2Q9H4D0 955 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 UBASH3AP57075 661 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 PPP2R3AQ06190 1150 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 TICAM2Q86XR7 235 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 CTAGE15A4D2H0 777 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 CTAGE8P0CG41 777 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 LIG1P18858 919 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 UBA7P41226 1012 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 CTAGE6Q86UF2 777 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 CTAGE4Q8IX94 777 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 TCP11L1Q9NUJ3 509 aa14.94□□□□□ -0.02
TCOF1-213ENST00000514442 RAD50Q92878 1312 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 CARD6Q9BX69 1037 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 ZC3H12CQ9C0D7 883 aaKnown RBP14.93□□□□□ -0.02
TCOF1-213ENST00000514442 ABCC4O15439 1325 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 PTPDC1A2A3K4 754 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 DHX32Q7L7V1 743 aaKnown RBP14.93□□□□□ -0.02
TCOF1-213ENST00000514442 CCDC102BQ68D86 513 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 SHROOM2Q13796 1616 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 SYKP43405 635 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 HSP90AA4PQ58FG1 418 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 CCDC87Q9NVE4 849 aa14.93□□□□□ -0.02
TCOF1-213ENST00000514442 RRP15Q9Y3B9 282 aaKnown RBP14.93□□□□□ -0.02
TCOF1-213ENST00000514442 PDE8AO60658 829 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 AFMP43652 599 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 DNAJC21Q5F1R6 531 aaKnown RBP14.92□□□□□ -0.02
TCOF1-213ENST00000514442 TMTC2Q8N394 836 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 GSPT1P15170 499 aaKnown RBP14.92□□□□□ -0.02
TCOF1-213ENST00000514442 CNBD1Q8NA66 436 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 CDCA7Q9BWT1 371 aaPredicted RBP14.92□□□□□ -0.02
TCOF1-213ENST00000514442 PARP3Q9Y6F1 533 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 NEURL1BA8MQ27 555 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 PHACTR2O75167 634 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 TSG101Q99816 390 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 USP44Q9H0E7 712 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 ABCC3O15438 1527 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 CALML4Q96GE6 196 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 IMPACTQ9P2X3 320 aa14.92□□□□□ -0.02
TCOF1-213ENST00000514442 LDHBP07195 334 aaKnown RBP14.91□□□□□ -0.02
TCOF1-213ENST00000514442 GBP2P32456 591 aaPredicted RBP14.91□□□□□ -0.02
TCOF1-213ENST00000514442 EDC3Q96F86 508 aaKnown RBP14.91□□□□□ -0.02
TCOF1-213ENST00000514442 ARMT1Q9H993 441 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.91□□□□□ -0.021e-6■■■■■ 169.1
TCOF1-213ENST00000514442 IFNKQ9P0W0 207 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 ANKRD7Q92527 254 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 SLC27A2O14975 620 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 GNAT2P19087 354 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 FKBP15Q5T1M5 1219 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 TTLL7Q6ZT98 887 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 PUM3Q15397 648 aaKnown RBP14.91□□□□□ -0.02
TCOF1-213ENST00000514442 ANKRD2Q9GZV1 360 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 HELLSQ9NRZ9 838 aa14.91□□□□□ -0.02
TCOF1-213ENST00000514442 ATP8B1O43520 1251 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 TUBBP07437 444 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 PARP10Q53GL7 1025 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 SNX14Q9Y5W7 946 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 LRRC8AQ8IWT6 810 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 DHX37Q8IY37 1157 aaKnown RBP14.9□□□□□ -0.02
TCOF1-213ENST00000514442 NUP88Q99567 741 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-213ENST00000514442 B4E1Z4 1266 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 POTEDQ86YR6 584 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 ZNF710Q8N1W2 664 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 NPHP4O75161 1426 aaPredicted RBP14.9□□□□□ -0.02
TCOF1-213ENST00000514442 USP6P35125 1406 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 MYO1BO43795 1136 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 CACNA2D4Q7Z3S7 1137 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 AFAP1L1Q8TED9 768 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 MRPS27Q92552 414 aaKnown RBP14.9□□□□□ -0.02
TCOF1-213ENST00000514442 ATP7BP35670 1465 aa14.9□□□□□ -0.02
TCOF1-213ENST00000514442 PPP1R12BO60237 982 aaPredicted RBP14.89□□□□□ -0.03
TCOF1-213ENST00000514442 OTUD6BQ8N6M0 293 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 VEZTQ9HBM0 779 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 SAP30BPQ9UHR5 308 aaKnown RBP14.89□□□□□ -0.03
TCOF1-213ENST00000514442 SGSM2O43147 1006 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 PROSER3Q2NL68 480 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 FBXO38Q6PIJ6 1188 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 GPR161Q8N6U8 529 aaKnown RBP14.89□□□□□ -0.03
TCOF1-213ENST00000514442 RTL1A6NKG5 1358 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 AATKQ6ZMQ8 1374 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 NAPAP54920 295 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 KCNG4Q8TDN1 519 aa14.89□□□□□ -0.03
TCOF1-213ENST00000514442 UFL1O94874 794 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms