RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SPDYE2Q495Y8 402 aa18.68■□□□□ 0.58
USP39-217ENST00000491659 AKAP11Q9UKA4 1901 aa18.68■□□□□ 0.58
USP39-217ENST00000491659 AOX1Q06278 1338 aa18.68■□□□□ 0.58
USP39-217ENST00000491659 A0A1B0GUL7 405 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 FAM155AB1AL88 458 aaPredicted RBP18.67■□□□□ 0.58
USP39-217ENST00000491659 SEMA3EO15041 775 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 HSPA8P11142 646 aaKnown RBP18.67■□□□□ 0.58
USP39-217ENST00000491659 G3BP1Q13283 466 aaKnown RBP eCLIP18.67■□□□□ 0.58
USP39-217ENST00000491659 MOB2Q70IA6 237 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 ARMC9Q7Z3E5 817 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 RASAL3Q86YV0 1011 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 TDRD3Q9H7E2 651 aaKnown RBP18.67■□□□□ 0.58
USP39-217ENST00000491659 C1orf115Q9H7X2 142 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 PRDM10Q9NQV6 1147 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 ZNF70Q9UC06 446 aaPredicted RBP18.67■□□□□ 0.58
USP39-217ENST00000491659 DENND2AQ9ULE3 1009 aa18.67■□□□□ 0.58
USP39-217ENST00000491659 UBE2Q2LH0YL09 131 aa18.66■□□□□ 0.58
USP39-217ENST00000491659 CA12O43570 354 aa18.66■□□□□ 0.58
USP39-217ENST00000491659 ADORA1P30542 326 aa18.66■□□□□ 0.58
USP39-217ENST00000491659 PHKA1P46020 1223 aa18.66■□□□□ 0.58
USP39-217ENST00000491659 LBX1P52954 281 aa18.66■□□□□ 0.58
USP39-217ENST00000491659 SSC5DA1L4H1 1573 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 ZBTB7BO15156 539 aaPredicted RBP18.65■□□□□ 0.58
USP39-217ENST00000491659 TNNI2P48788 182 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 PRKG1Q13976 671 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 POLA2Q14181 598 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 RASA3Q14644 834 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 MVPQ14764 893 aaKnown RBP18.65■□□□□ 0.58
USP39-217ENST00000491659 SUPT20HL1Q3ZLR7 823 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 IFFO2Q5TF58 517 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 CCDC102BQ68D86 513 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 TNS4Q8IZW8 715 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 PANK1Q8TE04 598 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 ZIC5Q96T25 663 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 TMOD2Q9NZR1 351 aa18.65■□□□□ 0.58
USP39-217ENST00000491659 TIMM10P62072 90 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 ATP8B2P98198 1209 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 KIF23Q02241 960 aaPredicted RBP18.64■□□□□ 0.57
USP39-217ENST00000491659 OS9Q13438 667 aaPredicted RBP18.64■□□□□ 0.57
USP39-217ENST00000491659 ZGPATQ8N5A5 531 aaKnown RBP18.64■□□□□ 0.57
USP39-217ENST00000491659 XAGE2Q96GT9 111 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 ZDHHC15Q96MV8 337 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 NEUROD6Q96NK8 337 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 MRIQ9BWK5 157 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 RCAN3Q9UKA8 241 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 ANGEL1Q9UNK9 670 aaKnown RBP18.64■□□□□ 0.57
USP39-217ENST00000491659 SALL1Q9NSC2 1324 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 OTOFQ9HC10 1997 aa18.64■□□□□ 0.57
USP39-217ENST00000491659 ZBTB22O15209 634 aa18.63■□□□□ 0.57
USP39-217ENST00000491659 PPP1R12BO60237 982 aaPredicted RBP18.63■□□□□ 0.57
USP39-217ENST00000491659 HHIPL2Q6UWX4 724 aa18.63■□□□□ 0.57
USP39-217ENST00000491659 SSH3Q8TE77 659 aa18.63■□□□□ 0.57
USP39-217ENST00000491659 PDS5AQ29RF7 1337 aaKnown RBP18.63■□□□□ 0.57
USP39-217ENST00000491659 MYH2Q9UKX2 1941 aa18.62■□□□□ 0.57
USP39-217ENST00000491659 TCP10L2B9ZVM9 353 aa18.62■□□□□ 0.57
USP39-217ENST00000491659 LDHBP07195 334 aaKnown RBP18.62■□□□□ 0.57
USP39-217ENST00000491659 GORABQ5T7V8 394 aa18.62■□□□□ 0.57
USP39-217ENST00000491659 REM2Q8IYK8 340 aaPredicted RBP18.62■□□□□ 0.57
USP39-217ENST00000491659 SURF6O75683 361 aaKnown RBP18.61■□□□□ 0.57
USP39-217ENST00000491659 PRDX5P30044 214 aa18.61■□□□□ 0.57
USP39-217ENST00000491659 RASGRF1Q13972 1273 aa18.61■□□□□ 0.57
USP39-217ENST00000491659 NBPF12Q5TAG4 269 aaPredicted RBP18.61■□□□□ 0.57
USP39-217ENST00000491659 TSKSQ9UJT2 592 aa18.61■□□□□ 0.57
USP39-217ENST00000491659 LAMB1P07942 1786 aa18.6■□□□□ 0.57
USP39-217ENST00000491659 IREB2P48200 963 aaKnown RBP18.6■□□□□ 0.57
USP39-217ENST00000491659 MAP3K11Q16584 847 aa18.6■□□□□ 0.57
USP39-217ENST00000491659 APOBEC3HQ6NTF7 200 aaKnown RBP18.6■□□□□ 0.57
USP39-217ENST00000491659 SAGE1Q9NXZ1 904 aa18.6■□□□□ 0.57
USP39-217ENST00000491659 FZD1Q9UP38 647 aa18.6■□□□□ 0.57
USP39-217ENST00000491659 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.6■□□□□ 0.57
USP39-217ENST00000491659 CACNB3P54284 484 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 DIXDC1Q155Q3 683 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 LDLRAD1Q5T700 205 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 CEP85Q6P2H3 762 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 DZIP1Q86YF9 867 aaKnown RBP18.59■□□□□ 0.57
USP39-217ENST00000491659 TMEM39BQ9GZU3 492 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 GPR108Q9NPR9 543 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 DDX19BQ9UMR2 479 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 DAGLAQ9Y4D2 1042 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 MAST2Q6P0Q8 1798 aa18.59■□□□□ 0.57
USP39-217ENST00000491659 RPAP1Q9BWH6 1393 aaPredicted RBP18.58■□□□□ 0.57
USP39-217ENST00000491659 UNCXA6NJT0 531 aa18.58■□□□□ 0.56
USP39-217ENST00000491659 FKBP1CQ5VVH2 108 aa18.58■□□□□ 0.56
USP39-217ENST00000491659 SPTY2D1Q68D10 685 aaPredicted RBP18.58■□□□□ 0.56
USP39-217ENST00000491659 FAM83AQ86UY5 434 aa18.58■□□□□ 0.56
USP39-217ENST00000491659 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.58■□□□□ 0.56
USP39-217ENST00000491659 CSRNP1Q96S65 589 aa18.58■□□□□ 0.56
USP39-217ENST00000491659 CHMP4BQ9H444 224 aaKnown RBP18.58■□□□□ 0.56
USP39-217ENST00000491659 ABCF2Q9UG63 623 aa18.58■□□□□ 0.56
USP39-217ENST00000491659 AK9Q5TCS8 1911 aa18.57■□□□□ 0.56
USP39-217ENST00000491659 ARID4AP29374 1257 aaPredicted RBP18.57■□□□□ 0.56
USP39-217ENST00000491659 MKRN3Q13064 507 aaKnown RBP18.57■□□□□ 0.56
USP39-217ENST00000491659 TNNI3KQ59H18 835 aa18.57■□□□□ 0.56
USP39-217ENST00000491659 SLF2Q8IX21 1173 aa18.57■□□□□ 0.56
USP39-217ENST00000491659 SLC10A4Q96EP9 437 aa18.57■□□□□ 0.56
USP39-217ENST00000491659 TEPSINQ96N21 525 aa18.57■□□□□ 0.56
USP39-217ENST00000491659 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.57■□□□□ 0.56
USP39-217ENST00000491659 COG6Q9Y2V7 657 aa18.57■□□□□ 0.56
USP39-217ENST00000491659 NOP58Q9Y2X3 529 aaKnown RBP18.57■□□□□ 0.56
USP39-217ENST00000491659 FPGT-TNNI3KV9GXZ4 949 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms