RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SCN4AP35499 1836 aa7.45□□□□□ -1.22
PTPN4-210ENST00000485247 AFDNP55196 1824 aaKnown RBP7.45□□□□□ -1.22
PTPN4-210ENST00000485247 CA12O43570 354 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 LORP23490 312 aaPredicted RBP7.44□□□□□ -1.22
PTPN4-210ENST00000485247 MAP2K2P36507 400 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 ABL2P42684 1182 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 RNF20Q5VTR2 975 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 BICDL1Q6ZP65 573 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 CCDC85AQ96PX6 553 aaPredicted RBP7.44□□□□□ -1.22
PTPN4-210ENST00000485247 CEP126Q9P2H0 1117 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 FER1L6Q2WGJ9 1857 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 ZNF541Q9H0D2 1346 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 THSD7BQ9C0I4 1608 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 TONSLQ96HA7 1378 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 LTBP1Q14766 1721 aa7.44□□□□□ -1.22
PTPN4-210ENST00000485247 SLC35F4A4IF30 521 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 ATP5J2-PTCD1G3V325 749 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 CST9Q5W186 159 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 ZNF592Q92610 1267 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 PUS7Q96PZ0 661 aaKnown RBP7.43□□□□□ -1.22
PTPN4-210ENST00000485247 OSBPL3Q9H4L5 887 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 NARFQ9UHQ1 456 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 SOS1Q07889 1333 aaPredicted RBP7.43□□□□□ -1.22
PTPN4-210ENST00000485247 KIF24Q5T7B8 1368 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 ADAMTSL1Q8N6G6 1762 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 NCAPD2Q15021 1401 aa7.43□□□□□ -1.22
PTPN4-210ENST00000485247 ADAMTS7Q9UKP4 1686 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 NRXN2Q9P2S2 1712 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 TRAF5O00463 557 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 TRAK2O60296 914 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 HSP90AB1P08238 724 aaKnown RBP7.42□□□□□ -1.22
PTPN4-210ENST00000485247 PDE6BP35913 854 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 TSGA10IPQ3SY00 556 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 PRPF40BQ6NWY9 871 aaKnown RBP7.42□□□□□ -1.22
PTPN4-210ENST00000485247 DNAJC10Q8IXB1 793 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 PHTF2Q8N3S3 785 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 CCDC155Q8N6L0 562 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 NFATC2IPQ8NCF5 419 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 BRIP1Q9BX63 1249 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 CARD11Q9BXL7 1154 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 PRM3Q9NNZ6 103 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 COG6Q9Y2V7 657 aa7.42□□□□□ -1.22
PTPN4-210ENST00000485247 INSM1Q01101 510 aaPredicted RBP7.41□□□□□ -1.22
PTPN4-210ENST00000485247 HABP4Q5JVS0 413 aaKnown RBP7.41□□□□□ -1.22
PTPN4-210ENST00000485247 CIAPIN1Q6FI81 312 aa7.41□□□□□ -1.22
PTPN4-210ENST00000485247 CNKSR1Q969H4 720 aa7.41□□□□□ -1.22
PTPN4-210ENST00000485247 GCC1Q96CN9 775 aa7.41□□□□□ -1.22
PTPN4-210ENST00000485247 ZNF277Q9NRM2 450 aaPredicted RBP7.41□□□□□ -1.22
PTPN4-210ENST00000485247 ST20-MTHFSA0A0A6YYL1 179 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 A0A1W2PRU2 124 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 MTHFSP49914 203 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 RNF144AP50876 292 aaPredicted RBP7.4□□□□□ -1.22
PTPN4-210ENST00000485247 EIF4G2P78344 907 aaKnown RBP eCLIP7.4□□□□□ -1.221e-7■■■■■ 57.2
PTPN4-210ENST00000485247 SOGA3Q5TF21 947 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 PRR5LQ6MZQ0 368 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 SAPCD2Q86UD0 394 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 NBPF15Q8N660 670 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 GPR161Q8N6U8 529 aaKnown RBP7.4□□□□□ -1.22
PTPN4-210ENST00000485247 POM121Q96HA1 1249 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 SIN3AQ96ST3 1273 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 ZBTB1Q9Y2K1 713 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 COL15A1P39059 1388 aa7.4□□□□□ -1.22
PTPN4-210ENST00000485247 TJP1Q07157 1748 aa7.4□□□□□ -1.23
PTPN4-210ENST00000485247 SLX4Q8IY92 1834 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 WASHC2AQ641Q2 1341 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 MEN1O00255 615 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 NPHP1O15259 732 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 CYP19A1P11511 503 aaPredicted RBP7.39□□□□□ -1.23
PTPN4-210ENST00000485247 NEUROD1Q13562 356 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 CCDC93Q567U6 631 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 TBC1D9BQ66K14 1250 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 STYK1Q6J9G0 422 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 ZNF530Q6P9A1 599 aaPredicted RBP7.39□□□□□ -1.23
PTPN4-210ENST00000485247 CYP2U1Q7Z449 544 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 GPC2Q8N158 579 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 ARHGEF10LQ9HCE6 1279 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 GJA3Q9Y6H8 435 aa7.39□□□□□ -1.23
PTPN4-210ENST00000485247 ANKRD31Q8N7Z5 1873 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 COL11A2P13942 1736 aaPredicted RBP7.38□□□□□ -1.23
PTPN4-210ENST00000485247 FZD9O00144 591 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 CELF2O95319 508 aaKnown RBP7.38□□□□□ -1.23
PTPN4-210ENST00000485247 SRGNP10124 158 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 CANXP27824 592 aaKnown RBP7.38□□□□□ -1.23
PTPN4-210ENST00000485247 LMOD1P29536 600 aaPredicted RBP7.38□□□□□ -1.23
PTPN4-210ENST00000485247 EPS15P42566 896 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 KRT76Q01546 638 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 FKBP4Q02790 459 aaKnown RBP eCLIP7.38□□□□□ -1.23
PTPN4-210ENST00000485247 PLEKHO1Q53GL0 409 aaPredicted RBP7.38□□□□□ -1.23
PTPN4-210ENST00000485247 OLFM4Q6UX06 510 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 LYSMD3Q7Z3D4 306 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 MASTLQ96GX5 879 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 ZIC5Q96T25 663 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 RAB6BQ9NRW1 208 aa7.38□□□□□ -1.23
PTPN4-210ENST00000485247 RHOQP17081 205 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 ITGA6P23229 1130 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 IARSP41252 1262 aaKnown RBP7.37□□□□□ -1.23
PTPN4-210ENST00000485247 CLN3Q13286 438 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 EIF4A2Q14240 407 aaKnown RBP7.37□□□□□ -1.23
PTPN4-210ENST00000485247 WASHC4Q2M389 1173 aa7.37□□□□□ -1.23
PTPN4-210ENST00000485247 C1orf141Q5JVX7 400 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms