RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 EGFRP00533 1210 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 SPTY2D1Q68D10 685 aaPredicted RBP12.84□□□□□ -0.35
SMC1A-206ENST00000470241 SAMD7Q7Z3H4 446 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 OGFOD1Q8N543 542 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 TRPM4Q8TD43 1214 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 TAF1DQ9H5J8 278 aaPredicted RBP12.84□□□□□ -0.35
SMC1A-206ENST00000470241 LRP2BPQ9P2M1 347 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 HDAC9Q9UKV0 1011 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 AKAP11Q9UKA4 1901 aa12.84□□□□□ -0.35
SMC1A-206ENST00000470241 IDH1O75874 414 aaKnown RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 VEGFAP15692 232 aaPredicted RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 EPHX2P34913 555 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 MMP14P50281 582 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 HDLBPQ00341 1268 aaKnown RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 MECOMQ03112 1051 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 TTF1Q15361 905 aaPredicted RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 DIXDC1Q155Q3 683 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 TBC1D10BQ4KMP7 808 aaPredicted RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 ZNF784Q8NCA9 323 aaPredicted RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 NSUN4Q96CB9 384 aaKnown RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 ZBED3Q96IU2 234 aaPredicted RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 MRIQ9BWK5 157 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 GPBP1L1Q9HC44 474 aaPredicted RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 MYOZ2Q9NPC6 264 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 ADARB2Q9NS39 739 aaKnown RBP12.83□□□□□ -0.36
SMC1A-206ENST00000470241 RAI14Q9P0K7 980 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 PCDHAC2Q9Y5I4 1007 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 MAST3O60307 1309 aa12.83□□□□□ -0.36
SMC1A-206ENST00000470241 IGSF3O75054 1194 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 CRKP46108 304 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 HIRAP54198 1017 aaPredicted RBP12.82□□□□□ -0.36
SMC1A-206ENST00000470241 CFAP100Q494V2 611 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 RBM26Q5T8P6 1007 aaKnown RBP12.82□□□□□ -0.36
SMC1A-206ENST00000470241 DZIP1Q86YF9 867 aaKnown RBP12.82□□□□□ -0.36
SMC1A-206ENST00000470241 KBTBD3Q8NAB2 608 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 MTMR14Q8NCE2 650 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 SERPINA10Q9UK55 444 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 GAKO14976 1311 aa12.82□□□□□ -0.36
SMC1A-206ENST00000470241 CHGBP05060 677 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 GSPT1P15170 499 aaKnown RBP12.81□□□□□ -0.36
SMC1A-206ENST00000470241 MAP3K12Q12852 859 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 KIF4BQ2VIQ3 1234 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 TTC22Q5TAA0 569 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 HHIPL2Q6UWX4 724 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 USP50Q70EL3 339 aaPredicted RBP12.81□□□□□ -0.36
SMC1A-206ENST00000470241 TEKT1Q969V4 418 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 FAM163AQ96GL9 167 aaPredicted RBP12.81□□□□□ -0.36
SMC1A-206ENST00000470241 PRMT6Q96LA8 375 aaPredicted RBP12.81□□□□□ -0.36
SMC1A-206ENST00000470241 ZDHHC15Q96MV8 337 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 DAGLAQ9Y4D2 1042 aa12.81□□□□□ -0.36
SMC1A-206ENST00000470241 SPDYE2BA6NHP3 402 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 WNT10BO00744 389 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 KIF3CO14782 793 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 SPDYE6P0CI01 402 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 PDE6AP16499 860 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 RGS3P49796 1198 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 GSTO1P78417 241 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 DLGAP5Q15398 846 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 NBPF9Q3BBW0 867 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 SLFNL1Q499Z3 407 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 NAA16Q6N069 864 aaPredicted RBP12.8□□□□□ -0.36
SMC1A-206ENST00000470241 APOBEC3HQ6NTF7 200 aaKnown RBP12.8□□□□□ -0.36
SMC1A-206ENST00000470241 ADGRA1Q86SQ6 560 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 MAGEB6Q8N7X4 407 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 EVI5LQ96CN4 794 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 MROH7-TTC4A0A0A0MT08 1334 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 ASTN2O75129 1339 aaPredicted RBP12.8□□□□□ -0.36
SMC1A-206ENST00000470241 MYH13Q9UKX3 1938 aa12.8□□□□□ -0.36
SMC1A-206ENST00000470241 TCRBV5S4A2TA0A5A2 114 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 POTEIP0CG38 1075 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 POTEJP0CG39 1038 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 CYP7A1P22680 504 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 ADD2P35612 726 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 RBM5P52756 815 aaKnown RBP eCLIP12.79□□□□□ -0.36
SMC1A-206ENST00000470241 EAPPQ56P03 285 aaPredicted RBP12.79□□□□□ -0.36
SMC1A-206ENST00000470241 SLC9C2Q5TAH2 1124 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 PNMA8AQ86V59 439 aaPredicted RBP12.79□□□□□ -0.36
SMC1A-206ENST00000470241 SLF2Q8IX21 1173 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 FSD1Q9BTV5 496 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.79□□□□□ -0.36
SMC1A-206ENST00000470241 ZNF532Q9HCE3 1301 aa12.79□□□□□ -0.36
SMC1A-206ENST00000470241 GPR75-ASB3A0A0A6YYF3 556 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 TRIM6-TRIM34B2RNG4 842 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 LDHCP07864 332 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 SDSP20132 328 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 UBE3CQ15386 1083 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 TMED8Q6PL24 325 aaPredicted RBP12.78□□□□□ -0.36
SMC1A-206ENST00000470241 CNTROBQ8N137 903 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 PGAP2Q9UHJ9 254 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 SCN4AP35499 1836 aa12.78□□□□□ -0.36
SMC1A-206ENST00000470241 RNF113AO15541 343 aaKnown RBP12.77□□□□□ -0.37
SMC1A-206ENST00000470241 BTDP43251 543 aa12.77□□□□□ -0.37
SMC1A-206ENST00000470241 SPDYE2Q495Y8 402 aa12.77□□□□□ -0.37
SMC1A-206ENST00000470241 ZSCAN25Q6NSZ9 544 aa12.77□□□□□ -0.37
SMC1A-206ENST00000470241 ZC3H15Q8WU90 426 aaKnown RBP12.77□□□□□ -0.37
SMC1A-206ENST00000470241 RILPL2Q969X0 211 aa12.77□□□□□ -0.37
SMC1A-206ENST00000470241 TDRD3Q9H7E2 651 aaKnown RBP12.77□□□□□ -0.37
SMC1A-206ENST00000470241 ADAMTSL1Q8N6G6 1762 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 CLRN2A0PK11 232 aa12.76□□□□□ -0.37
SMC1A-206ENST00000470241 RHBDL3P58872 404 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms