RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 MRVI1Q9Y6F6 885 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 DDX60Q8IY21 1712 aaKnown RBP11.28□□□□□ -0.6
HDAC3-205ENST00000469550 TYRO3Q06418 890 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 PLA2G4DQ86XP0 818 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 NLRP3Q96P20 1036 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 PDRG1Q9NUG6 133 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 CTNNA3Q9UI47 895 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 ATP6V0A2Q9Y487 856 aa11.28□□□□□ -0.6
HDAC3-205ENST00000469550 RASSF10A6NK89 507 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 CASTP20810 708 aaKnown RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 PDCP20941 246 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 PTGS1P23219 599 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 PROSER3Q2NL68 480 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 EAPPQ56P03 285 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 SPC24Q8NBT2 197 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 TDRD7Q8NHU6 1098 aaKnown RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 RTFDC1Q9BY42 306 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 IL1RAPL2Q9NP60 686 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 DDX19AQ9NUU7 478 aaKnown RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 SPDYE4A6NLX3 237 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 SURF6O75683 361 aaKnown RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 GLRX3O76003 335 aaKnown RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 CDC25BP30305 580 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 SCNN1DP51172 638 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 CCDC186Q7Z3E2 898 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 TTC6Q86TZ1 520 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 CCDC83Q8IWF9 413 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 LARGE2Q8N3Y3 721 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 SCAND2PQ9GZW5 306 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 DDX41Q9UJV9 622 aaKnown RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 CYP46A1Q9Y6A2 500 aa11.27□□□□□ -0.61
HDAC3-205ENST00000469550 MORC2Q9Y6X9 1032 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-205ENST00000469550 LARGE1O95461 756 aa11.26□□□□□ -0.61
HDAC3-205ENST00000469550 HOXB7P09629 217 aa11.26□□□□□ -0.61
HDAC3-205ENST00000469550 LMOD1P29536 600 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-205ENST00000469550 ZNF75DP51815 510 aa11.26□□□□□ -0.61
HDAC3-205ENST00000469550 NIM1KQ8IY84 436 aa11.26□□□□□ -0.61
HDAC3-205ENST00000469550 SUPT20HQ8NEM7 779 aa11.26□□□□□ -0.61
HDAC3-205ENST00000469550 ALDH8A1Q9H2A2 487 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-205ENST00000469550 DDX21Q9NR30 783 aaKnown RBP eCLIP11.26□□□□□ -0.61
HDAC3-205ENST00000469550 NEMFO60524 1076 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 BBOX1O75936 387 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 EIF2S2P20042 333 aaKnown RBP11.25□□□□□ -0.61
HDAC3-205ENST00000469550 VEGFBP49765 207 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 FAM193AP78312 1265 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 NECTIN1Q15223 517 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 ZSCAN25Q6NSZ9 544 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 USP50Q70EL3 339 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-205ENST00000469550 NLRP10Q86W26 655 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 CBX8Q9HC52 389 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 CLEC11AQ9Y240 323 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 DUOX1Q9NRD9 1551 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 CDHR2Q9BYE9 1310 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 TNNT1P13805 278 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 ST3GAL1Q11201 340 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 LARP1BQ659C4 914 aaKnown RBP11.25□□□□□ -0.61
HDAC3-205ENST00000469550 MAP1SQ66K74 1059 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-205ENST00000469550 CWC27Q6UX04 472 aaKnown RBP11.25□□□□□ -0.61
HDAC3-205ENST00000469550 COPS6Q7L5N1 327 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 TMC4Q7Z404 712 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 SP8Q8IXZ3 490 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 XAGE3Q8WTP9 111 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 TMX4Q9H1E5 349 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-205ENST00000469550 TNMDQ9H2S6 317 aa11.25□□□□□ -0.61
HDAC3-205ENST00000469550 SH3TC1Q8TE82 1336 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 VPS37CA5D8V6 355 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-205ENST00000469550 FOXN1O15353 648 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 PPIP5K2O43314 1243 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 ANXA1P04083 346 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 ZKSCAN1P17029 563 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-205ENST00000469550 ME3Q16798 604 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 SLC51AQ86UW1 340 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 LUZP1Q86V48 1076 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 CCDC112Q8NEF3 446 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 JAKMIP1Q96N16 626 aaKnown RBP11.24□□□□□ -0.61
HDAC3-205ENST00000469550 CLSTN2Q9H4D0 955 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 SNRKQ9NRH2 765 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 GJA3Q9Y6H8 435 aa11.24□□□□□ -0.61
HDAC3-205ENST00000469550 MAP4K4O95819 1239 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-205ENST00000469550 LIG1P18858 919 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 PSMA5P28066 241 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 ANKRD1Q15327 319 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 ANO6Q4KMQ2 910 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 SARM1Q6SZW1 724 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 CHMP4AQ9BY43 222 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 WBP1LQ9NX94 342 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 ZNRF3Q9ULT6 936 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 TAF1P21675 1872 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 EPS15P42566 896 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 CTCFP49711 727 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-205ENST00000469550 MTX1Q13505 466 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 GRAPQ13588 217 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 DEFB115Q30KQ5 88 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 ADCK5Q3MIX3 580 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 GRAPLQ8TC17 118 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-205ENST00000469550 LARP6Q9BRS8 491 aaKnown RBP11.23□□□□□ -0.61
HDAC3-205ENST00000469550 TRIM5Q9C035 493 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 KCND1Q9NSA2 647 aa11.23□□□□□ -0.61
HDAC3-205ENST00000469550 GPRC5DQ9NZD1 345 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms